Cluster: CGMR061372_CGC24
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR061372
- CGC Family ID: CGCFAM_00123
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_319541 | k141_319541_19 | 21132 | 22448 | + | 2.A.8.1.4 |
| STP | k141_319541 | k141_319541_20 | 22550 | 23077 | + | SKI |
| TC | k141_319541 | k141_319541_21 | 23108 | 23701 | - | 2.A.95.1.5 |
| pfam | k141_319541 | k141_319541_22 | 23895 | 24998 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | k141_319541 | k141_319541_23 | 25442 | 27628 | + | CBM48 | GH13_9 |
| CAZyme | k141_319541 | k141_319541_24 | 27625 | 29607 | + | CBM48 | GH13_11 |
| pfam | k141_319541 | k141_319541_25 | 29623 | 30900 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | k141_319541 | k141_319541_26 | 31036 | 32466 | + | GT5 |
| CAZyme | k141_319541 | k141_319541_27 | 32608 | 35055 | + | GT35 |
| pfam | k141_319541 | k141_319541_28 | 35123 | 36631 | - | DAO | DAO_C |
| TF | k141_319541 | k141_319541_29 | 36878 | 37636 | - | HTH_DeoR |
| TC | k141_319541 | k141_319541_30 | 37687 | 38523 | - | 9.B.104.1.1 |
| STP | k141_319541 | k141_319541_31 | 38695 | 39021 | - | Rhodanese |
| TF | k141_319541 | k141_319541_32 | 39104 | 41818 | - | GerE |
| CAZyme | k141_319541 | k141_319541_33 | 42279 | 44684 | + | GT35 |
| CAZyme | k141_319541 | k141_319541_34 | 44694 | 46784 | + | GH77 |
Gene ID: k141_319541_19
Type: TC
Location: 21132 - 22448 (+)
Type: TC
Location: 21132 - 22448 (+)
Gene ID: k141_319541_20
Type: STP
Location: 22550 - 23077 (+)
Type: STP
Location: 22550 - 23077 (+)
Gene ID: k141_319541_21
Type: TC
Location: 23108 - 23701 (-)
Type: TC
Location: 23108 - 23701 (-)
Gene ID: k141_319541_22
Type: pfam
Location: 23895 - 24998 (+)
Type: pfam
Location: 23895 - 24998 (+)
Gene ID: k141_319541_23
Type: CAZyme
Location: 25442 - 27628 (+)
Type: CAZyme
Location: 25442 - 27628 (+)
Gene ID: k141_319541_24
Type: CAZyme
Location: 27625 - 29607 (+)
Type: CAZyme
Location: 27625 - 29607 (+)
Gene ID: k141_319541_25
Type: pfam
Location: 29623 - 30900 (+)
Type: pfam
Location: 29623 - 30900 (+)
Gene ID: k141_319541_26
Type: CAZyme
Location: 31036 - 32466 (+)
Type: CAZyme
Location: 31036 - 32466 (+)
Gene ID: k141_319541_27
Type: CAZyme
Location: 32608 - 35055 (+)
Type: CAZyme
Location: 32608 - 35055 (+)
Gene ID: k141_319541_28
Type: pfam
Location: 35123 - 36631 (-)
Type: pfam
Location: 35123 - 36631 (-)
Gene ID: k141_319541_29
Type: TF
Location: 36878 - 37636 (-)
Type: TF
Location: 36878 - 37636 (-)
Gene ID: k141_319541_30
Type: TC
Location: 37687 - 38523 (-)
Type: TC
Location: 37687 - 38523 (-)
Gene ID: k141_319541_31
Type: STP
Location: 38695 - 39021 (-)
Type: STP
Location: 38695 - 39021 (-)
Gene ID: k141_319541_32
Type: TF
Location: 39104 - 41818 (-)
Type: TF
Location: 39104 - 41818 (-)
Gene ID: k141_319541_33
Type: CAZyme
Location: 42279 - 44684 (+)
Type: CAZyme
Location: 42279 - 44684 (+)
Gene ID: k141_319541_34
Type: CAZyme
Location: 44694 - 46784 (+)
Type: CAZyme
Location: 44694 - 46784 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia bockelmannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.