Cluster: CGMR060969_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR060969
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_10473 | k141_10473_60 | 69851 | 72259 | - | 9.B.144.1.5 |
| CAZyme | k141_10473 | k141_10473_61 | 72243 | 73211 | - | GT2 |
| CAZyme | k141_10473 | k141_10473_62 | 73218 | 74189 | - | GT81 |
| TC | k141_10473 | k141_10473_63 | 74350 | 75195 | + | 3.A.1.103.6 |
| TC | k141_10473 | k141_10473_64 | 75207 | 75974 | + | 3.A.1.103.1 |
| TC | k141_10473 | k141_10473_65 | 76180 | 77166 | + | 9.B.97.6.3 |
Gene ID: k141_10473_60
Type: TC
Location: 69851 - 72259 (-)
Type: TC
Location: 69851 - 72259 (-)
Gene ID: k141_10473_61
Type: CAZyme
Location: 72243 - 73211 (-)
Type: CAZyme
Location: 72243 - 73211 (-)
Gene ID: k141_10473_62
Type: CAZyme
Location: 73218 - 74189 (-)
Type: CAZyme
Location: 73218 - 74189 (-)
Gene ID: k141_10473_63
Type: TC
Location: 74350 - 75195 (+)
Type: TC
Location: 74350 - 75195 (+)
Gene ID: k141_10473_64
Type: TC
Location: 75207 - 75974 (+)
Type: TC
Location: 75207 - 75974 (+)
Gene ID: k141_10473_65
Type: TC
Location: 76180 - 77166 (+)
Type: TC
Location: 76180 - 77166 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.