Cluster: CGMR060950_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR060950
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_189018 | k141_189018_26 | 21029 | 21781 | - | 3.A.1.3.25 |
| TC | k141_189018 | k141_189018_27 | 21771 | 23303 | - | 3.A.1.3.15 |
| TC | k141_189018 | k141_189018_28 | 23461 | 24570 | - | 8.A.59.4.1 |
| pfam | k141_189018 | k141_189018_29 | 24677 | 25024 | - | Hpt |
| CAZyme | k141_189018 | k141_189018_30 | 25113 | 25958 | - | CE4 |
| STP | k141_189018 | k141_189018_31 | 26256 | 28373 | + | HATPase_c |
| pfam | k141_189018 | k141_189018_32 | 28682 | 29662 | - | BPD_transp_2 |
| TC | k141_189018 | k141_189018_33 | 29664 | 30770 | - | 3.A.1.2.12 |
| TC | k141_189018 | k141_189018_34 | 30763 | 32295 | - | 3.A.1.2.17 |
Gene ID: k141_189018_26
Type: TC
Location: 21029 - 21781 (-)
Type: TC
Location: 21029 - 21781 (-)
Gene ID: k141_189018_27
Type: TC
Location: 21771 - 23303 (-)
Type: TC
Location: 21771 - 23303 (-)
Gene ID: k141_189018_28
Type: TC
Location: 23461 - 24570 (-)
Type: TC
Location: 23461 - 24570 (-)
Gene ID: k141_189018_29
Type: pfam
Location: 24677 - 25024 (-)
Type: pfam
Location: 24677 - 25024 (-)
Gene ID: k141_189018_30
Type: CAZyme
Location: 25113 - 25958 (-)
Type: CAZyme
Location: 25113 - 25958 (-)
Gene ID: k141_189018_31
Type: STP
Location: 26256 - 28373 (+)
Type: STP
Location: 26256 - 28373 (+)
Gene ID: k141_189018_32
Type: pfam
Location: 28682 - 29662 (-)
Type: pfam
Location: 28682 - 29662 (-)
Gene ID: k141_189018_33
Type: TC
Location: 29664 - 30770 (-)
Type: TC
Location: 29664 - 30770 (-)
Gene ID: k141_189018_34
Type: TC
Location: 30763 - 32295 (-)
Type: TC
Location: 30763 - 32295 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900756925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_189018_26 | vegetarian > vegan | 1.41386 | 0.01882 |
| k141_189018_32 | vegan > omnivore | 1.45964 | 0.00245 |
| k141_189018_32 | vegetarian > omnivore | 1.48303 | 0.01416 |
| k141_189018_33 | vegetarian > omnivore | 1.15064 | 0.01416 |