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Cluster: CGMR060701_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_57488 k141_57488_4 5142 6029 + 3.A.1.1.23
TC k141_57488 k141_57488_5 6044 6907 + 3.A.1.1.34
TF k141_57488 k141_57488_6 6985 7932 + HTH_AraC | HTH_AraC
TC k141_57488 k141_57488_7 8069 9052 + 3.A.1.14.1
pfam k141_57488 k141_57488_8 9049 10014 + FecCD
TC k141_57488 k141_57488_9 10077 10838 + 3.A.1.14.3
STP k141_57488 k141_57488_10 10916 11977 + Peripla_BP_2
pfam k141_57488 k141_57488_11 12125 12634 + VTT_dom
CAZyme k141_57488 k141_57488_12 12648 13910 + GT4
TF k141_57488 k141_57488_13 13882 14592 + Trans_reg_C
STP k141_57488 k141_57488_14 14564 16852 + HATPase_c | HisKA
TC k141_57488 k141_57488_15 17090 18847 + 8.A.59.2.1
Gene ID: k141_57488_4
Type: TC
Location: 5142 - 6029 (+)
Gene ID: k141_57488_5
Type: TC
Location: 6044 - 6907 (+)
Gene ID: k141_57488_6
Type: TF
Location: 6985 - 7932 (+)
Gene ID: k141_57488_7
Type: TC
Location: 8069 - 9052 (+)
Gene ID: k141_57488_8
Type: pfam
Location: 9049 - 10014 (+)
Gene ID: k141_57488_9
Type: TC
Location: 10077 - 10838 (+)
Gene ID: k141_57488_10
Type: STP
Location: 10916 - 11977 (+)
Gene ID: k141_57488_11
Type: pfam
Location: 12125 - 12634 (+)
Gene ID: k141_57488_12
Type: CAZyme
Location: 12648 - 13910 (+)
Gene ID: k141_57488_13
Type: TF
Location: 13882 - 14592 (+)
Gene ID: k141_57488_14
Type: STP
Location: 14564 - 16852 (+)
Gene ID: k141_57488_15
Type: TC
Location: 17090 - 18847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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