Cluster: CGMR056796_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR056796
- CGC Family ID: CGCFAM_06696
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_178152 | k141_178152_1 | 3 | 1502 | - | 3.A.1.135.5 |
| TF | k141_178152 | k141_178152_2 | 1499 | 1957 | - | MarR |
| CAZyme | k141_178152 | k141_178152_3 | 2561 | 3847 | - | GH18 |
| TC | k141_178152 | k141_178152_4 | 3976 | 5964 | + | 9.A.8.1.5 |
| TC | k141_178152 | k141_178152_5 | 5978 | 6880 | - | 9.A.5.3.1 |
Gene ID: k141_178152_1
Type: TC
Location: 3 - 1502 (-)
Type: TC
Location: 3 - 1502 (-)
Gene ID: k141_178152_2
Type: TF
Location: 1499 - 1957 (-)
Type: TF
Location: 1499 - 1957 (-)
Gene ID: k141_178152_3
Type: CAZyme
Location: 2561 - 3847 (-)
Type: CAZyme
Location: 2561 - 3847 (-)
Gene ID: k141_178152_4
Type: TC
Location: 3976 - 5964 (+)
Type: TC
Location: 3976 - 5964 (+)
Gene ID: k141_178152_5
Type: TC
Location: 5978 - 6880 (-)
Type: TC
Location: 5978 - 6880 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp902388735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_178152_2 | vegan > omnivore | 1.19189 | 0.00825 |
| k141_178152_2 | vegetarian > omnivore | 1.74023 | 0.01882 |