Cluster: CGMR056444_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR056444
- CGC Family ID: CGCFAM_08741
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_70571 | k141_70571_19 | 28302 | 30749 | + | 1.B.14.6.11 |
| pfam | k141_70571 | k141_70571_20 | 30848 | 31621 | + | Trehalose_PPase |
| CAZyme | k141_70571 | k141_70571_21 | 31645 | 33426 | + | GH15 |
| CAZyme | k141_70571 | k141_70571_22 | 33423 | 34790 | + | GT20 |
| TC | k141_70571 | k141_70571_23 | 35089 | 36357 | + | 9.B.153.3.1 |
| pfam | k141_70571 | k141_70571_24 | 36427 | 37215 | - | Cu-oxidase_4 |
| pfam | k141_70571 | k141_70571_25 | 37215 | 38210 | - | PseudoU_synth_2 | S4 |
| TC | k141_70571 | k141_70571_26 | 38327 | 39211 | + | 1.B.33.1.3 |
Gene ID: k141_70571_19
Type: TC
Location: 28302 - 30749 (+)
Type: TC
Location: 28302 - 30749 (+)
Gene ID: k141_70571_20
Type: pfam
Location: 30848 - 31621 (+)
Type: pfam
Location: 30848 - 31621 (+)
Gene ID: k141_70571_21
Type: CAZyme
Location: 31645 - 33426 (+)
Type: CAZyme
Location: 31645 - 33426 (+)
Gene ID: k141_70571_22
Type: CAZyme
Location: 33423 - 34790 (+)
Type: CAZyme
Location: 33423 - 34790 (+)
Gene ID: k141_70571_23
Type: TC
Location: 35089 - 36357 (+)
Type: TC
Location: 35089 - 36357 (+)
Gene ID: k141_70571_24
Type: pfam
Location: 36427 - 37215 (-)
Type: pfam
Location: 36427 - 37215 (-)
Gene ID: k141_70571_25
Type: pfam
Location: 37215 - 38210 (-)
Type: pfam
Location: 37215 - 38210 (-)
Gene ID: k141_70571_26
Type: TC
Location: 38327 - 39211 (+)
Type: TC
Location: 38327 - 39211 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.