Cluster: CGMR056444_CGC36
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR056444
- CGC Family ID: CGCFAM_03856
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_128867 | k141_128867_133 | 150791 | 153127 | - | GH20 |
| TC | k141_128867 | k141_128867_134 | 153244 | 155907 | - | 1.B.14.12.2 |
| STP | k141_128867 | k141_128867_135 | 156018 | 157034 | - | Glucokinase |
| TC | k141_128867 | k141_128867_136 | 157403 | 158695 | + | 2.A.1.7.9 |
| TF | k141_128867 | k141_128867_137 | 158738 | 159805 | + | LacI |
| STP | k141_128867 | k141_128867_138 | 159813 | 160841 | + | SIS | SIS |
| CAZyme | k141_128867 | k141_128867_139 | 160841 | 161989 | + | CE9 |
| pfam | k141_128867 | k141_128867_140 | 161986 | 163053 | + | HGSNAT_cat |
| TC | k141_128867 | k141_128867_141 | 163187 | 166162 | + | 1.B.12.5.7 |
| TF | k141_128867 | k141_128867_142 | 166218 | 166937 | + | 0040266 |
| TC | k141_128867 | k141_128867_143 | 167035 | 168318 | + | 2.A.1.14.25 |
| pfam | k141_128867 | k141_128867_144 | 168364 | 169533 | - | MR_MLE_N | MR_MLE_C |
| pfam | k141_128867 | k141_128867_145 | 169530 | 170462 | - | DHDPS |
| TC | k141_128867 | k141_128867_146 | 170708 | 173383 | + | 1.B.14.12.2 |
Gene ID: k141_128867_133
Type: CAZyme
Location: 150791 - 153127 (-)
Type: CAZyme
Location: 150791 - 153127 (-)
Gene ID: k141_128867_134
Type: TC
Location: 153244 - 155907 (-)
Type: TC
Location: 153244 - 155907 (-)
Gene ID: k141_128867_135
Type: STP
Location: 156018 - 157034 (-)
Type: STP
Location: 156018 - 157034 (-)
Gene ID: k141_128867_136
Type: TC
Location: 157403 - 158695 (+)
Type: TC
Location: 157403 - 158695 (+)
Gene ID: k141_128867_137
Type: TF
Location: 158738 - 159805 (+)
Type: TF
Location: 158738 - 159805 (+)
Gene ID: k141_128867_138
Type: STP
Location: 159813 - 160841 (+)
Type: STP
Location: 159813 - 160841 (+)
Gene ID: k141_128867_139
Type: CAZyme
Location: 160841 - 161989 (+)
Type: CAZyme
Location: 160841 - 161989 (+)
Gene ID: k141_128867_140
Type: pfam
Location: 161986 - 163053 (+)
Type: pfam
Location: 161986 - 163053 (+)
Gene ID: k141_128867_141
Type: TC
Location: 163187 - 166162 (+)
Type: TC
Location: 163187 - 166162 (+)
Gene ID: k141_128867_142
Type: TF
Location: 166218 - 166937 (+)
Type: TF
Location: 166218 - 166937 (+)
Gene ID: k141_128867_143
Type: TC
Location: 167035 - 168318 (+)
Type: TC
Location: 167035 - 168318 (+)
Gene ID: k141_128867_144
Type: pfam
Location: 168364 - 169533 (-)
Type: pfam
Location: 168364 - 169533 (-)
Gene ID: k141_128867_145
Type: pfam
Location: 169530 - 170462 (-)
Type: pfam
Location: 169530 - 170462 (-)
Gene ID: k141_128867_146
Type: TC
Location: 170708 - 173383 (+)
Type: TC
Location: 170708 - 173383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.