Cluster: CGMR056444_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR056444
- CGC Family ID: CGCFAM_02221
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_64999 | k141_64999_42 | 56230 | 58857 | - | GH2 |
| pfam | k141_64999 | k141_64999_43 | 58912 | 60105 | - | GlcNAc_2-epim |
| STP | k141_64999 | k141_64999_44 | 60102 | 61100 | - | PfkB |
| TC | k141_64999 | k141_64999_45 | 61108 | 62418 | - | 2.A.1.7.10 |
| TF | k141_64999 | k141_64999_46 | 62463 | 63533 | - | LacI |
| CAZyme | k141_64999 | k141_64999_47 | 63606 | 66041 | - | GH92 |
| TC | k141_64999 | k141_64999_48 | 66485 | 69565 | + | 1.B.14.12.2 |
| TC | k141_64999 | k141_64999_49 | 69653 | 70381 | - | 9.B.158.1.1 |
Gene ID: k141_64999_42
Type: CAZyme
Location: 56230 - 58857 (-)
Type: CAZyme
Location: 56230 - 58857 (-)
Gene ID: k141_64999_43
Type: pfam
Location: 58912 - 60105 (-)
Type: pfam
Location: 58912 - 60105 (-)
Gene ID: k141_64999_44
Type: STP
Location: 60102 - 61100 (-)
Type: STP
Location: 60102 - 61100 (-)
Gene ID: k141_64999_45
Type: TC
Location: 61108 - 62418 (-)
Type: TC
Location: 61108 - 62418 (-)
Gene ID: k141_64999_46
Type: TF
Location: 62463 - 63533 (-)
Type: TF
Location: 62463 - 63533 (-)
Gene ID: k141_64999_47
Type: CAZyme
Location: 63606 - 66041 (-)
Type: CAZyme
Location: 63606 - 66041 (-)
Gene ID: k141_64999_48
Type: TC
Location: 66485 - 69565 (+)
Type: TC
Location: 66485 - 69565 (+)
Gene ID: k141_64999_49
Type: TC
Location: 69653 - 70381 (-)
Type: TC
Location: 69653 - 70381 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.