Cluster: CGMR055983_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR055983
- CGC Family ID: CGCFAM_00398
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_198481 | k141_198481_35 | 41231 | 42250 | - | GT2 |
| CAZyme | k141_198481 | k141_198481_36 | 42507 | 43610 | + | GT2 |
| CAZyme | k141_198481 | k141_198481_37 | 43617 | 44657 | + | GT2 |
| CAZyme | k141_198481 | k141_198481_38 | 44732 | 45850 | + | GT2 |
| CAZyme | k141_198481 | k141_198481_39 | 45863 | 46930 | + | GT2 |
| CAZyme | k141_198481 | k141_198481_40 | 46931 | 49417 | + | GT2 | GT2 |
| pfam | k141_198481 | k141_198481_41 | 49731 | 50987 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| pfam | k141_198481 | k141_198481_42 | 51068 | 53278 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| CAZyme | k141_198481 | k141_198481_43 | 53544 | 56288 | + | GH25 |
| TC | k141_198481 | k141_198481_44 | 56350 | 57291 | - | 2.A.7.18.1 |
Gene ID: k141_198481_35
Type: CAZyme
Location: 41231 - 42250 (-)
Type: CAZyme
Location: 41231 - 42250 (-)
Gene ID: k141_198481_36
Type: CAZyme
Location: 42507 - 43610 (+)
Type: CAZyme
Location: 42507 - 43610 (+)
Gene ID: k141_198481_37
Type: CAZyme
Location: 43617 - 44657 (+)
Type: CAZyme
Location: 43617 - 44657 (+)
Gene ID: k141_198481_38
Type: CAZyme
Location: 44732 - 45850 (+)
Type: CAZyme
Location: 44732 - 45850 (+)
Gene ID: k141_198481_39
Type: CAZyme
Location: 45863 - 46930 (+)
Type: CAZyme
Location: 45863 - 46930 (+)
Gene ID: k141_198481_40
Type: CAZyme
Location: 46931 - 49417 (+)
Type: CAZyme
Location: 46931 - 49417 (+)
Gene ID: k141_198481_41
Type: pfam
Location: 49731 - 50987 (+)
Type: pfam
Location: 49731 - 50987 (+)
Gene ID: k141_198481_42
Type: pfam
Location: 51068 - 53278 (+)
Type: pfam
Location: 51068 - 53278 (+)
Gene ID: k141_198481_43
Type: CAZyme
Location: 53544 - 56288 (+)
Type: CAZyme
Location: 53544 - 56288 (+)
Gene ID: k141_198481_44
Type: TC
Location: 56350 - 57291 (-)
Type: TC
Location: 56350 - 57291 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp027669365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.