Cluster: CGMR055846_CGC2
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR055846
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_149288 | k141_149288_63 | 51333 | 53195 | - | GT4 | GT4 |
| pfam | k141_149288 | k141_149288_64 | 53921 | 54358 | + | Ferritin |
| pfam | k141_149288 | k141_149288_65 | 54505 | 55551 | + | GTP_cyclohydro2 | DHBP_synthase |
| TC | k141_149288 | k141_149288_66 | 55586 | 56386 | - | 3.A.25.2.1 |
| STP | k141_149288 | k141_149288_67 | 56390 | 58750 | - | TPR_2 |
| TC | k141_149288 | k141_149288_68 | 58789 | 60258 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_69 | 60260 | 61846 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_70 | 61852 | 63723 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_71 | 63727 | 64029 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_72 | 64026 | 64547 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_73 | 64540 | 65232 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_74 | 65242 | 66240 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_75 | 66237 | 68750 | - | 3.D.1.7.1 |
| NULL(UNKNOWN) | k141_149288 | k141_149288_76 | 68747 | 69583 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_149288 | k141_149288_77 | 69580 | 69807 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_78 | 69818 | 71047 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_79 | 71044 | 71787 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_80 | 71813 | 72322 | - | 3.D.1.7.1 |
| TC | k141_149288 | k141_149288_81 | 72304 | 72708 | - | 3.D.1.7.1 |
Gene ID: k141_149288_63
Type: CAZyme
Location: 51333 - 53195 (-)
Type: CAZyme
Location: 51333 - 53195 (-)
Gene ID: k141_149288_64
Type: pfam
Location: 53921 - 54358 (+)
Type: pfam
Location: 53921 - 54358 (+)
Gene ID: k141_149288_65
Type: pfam
Location: 54505 - 55551 (+)
Type: pfam
Location: 54505 - 55551 (+)
Gene ID: k141_149288_66
Type: TC
Location: 55586 - 56386 (-)
Type: TC
Location: 55586 - 56386 (-)
Gene ID: k141_149288_67
Type: STP
Location: 56390 - 58750 (-)
Type: STP
Location: 56390 - 58750 (-)
Gene ID: k141_149288_68
Type: TC
Location: 58789 - 60258 (-)
Type: TC
Location: 58789 - 60258 (-)
Gene ID: k141_149288_69
Type: TC
Location: 60260 - 61846 (-)
Type: TC
Location: 60260 - 61846 (-)
Gene ID: k141_149288_70
Type: TC
Location: 61852 - 63723 (-)
Type: TC
Location: 61852 - 63723 (-)
Gene ID: k141_149288_71
Type: TC
Location: 63727 - 64029 (-)
Type: TC
Location: 63727 - 64029 (-)
Gene ID: k141_149288_72
Type: TC
Location: 64026 - 64547 (-)
Type: TC
Location: 64026 - 64547 (-)
Gene ID: k141_149288_73
Type: TC
Location: 64540 - 65232 (-)
Type: TC
Location: 64540 - 65232 (-)
Gene ID: k141_149288_74
Type: TC
Location: 65242 - 66240 (-)
Type: TC
Location: 65242 - 66240 (-)
Gene ID: k141_149288_75
Type: TC
Location: 66237 - 68750 (-)
Type: TC
Location: 66237 - 68750 (-)
Gene ID: k141_149288_76
Type:
Location: 68747 - 69583 (-)
Type:
Location: 68747 - 69583 (-)
Gene ID: k141_149288_77
Type: TC
Location: 69580 - 69807 (-)
Type: TC
Location: 69580 - 69807 (-)
Gene ID: k141_149288_78
Type: TC
Location: 69818 - 71047 (-)
Type: TC
Location: 69818 - 71047 (-)
Gene ID: k141_149288_79
Type: TC
Location: 71044 - 71787 (-)
Type: TC
Location: 71044 - 71787 (-)
Gene ID: k141_149288_80
Type: TC
Location: 71813 - 72322 (-)
Type: TC
Location: 71813 - 72322 (-)
Gene ID: k141_149288_81
Type: TC
Location: 72304 - 72708 (-)
Type: TC
Location: 72304 - 72708 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_C
Species
Helicobacter_C magdeburgensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.