Cluster: CGMR055594_CGC16
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: CGMR055594
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1487176 | k141_1487176_23 | 19335 | 20108 | - | 3.A.1.1.5 |
| pfam | k141_1487176 | k141_1487176_24 | 20279 | 21517 | - | Glyphos_transf |
| pfam | k141_1487176 | k141_1487176_25 | 21514 | 24207 | - | 60KD_IMP |
| CAZyme | k141_1487176 | k141_1487176_26 | 24276 | 25349 | - | GT4 |
| CAZyme | k141_1487176 | k141_1487176_27 | 25359 | 26273 | - | GT2 |
| NULL(UNKNOWN) | k141_1487176 | k141_1487176_28 | 26415 | 26618 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_1487176 | k141_1487176_29 | 26622 | 27473 | - | Glycos_transf_2 |
| CAZyme | k141_1487176 | k141_1487176_30 | 27568 | 28740 | + | GT4 |
| CAZyme | k141_1487176 | k141_1487176_31 | 28741 | 29601 | - | GT2 |
| CAZyme | k141_1487176 | k141_1487176_32 | 29598 | 30857 | - | GT4 |
| CAZyme | k141_1487176 | k141_1487176_33 | 30854 | 31618 | - | GT32 |
| CAZyme | k141_1487176 | k141_1487176_34 | 31608 | 32426 | - | GT2 |
| NULL(UNKNOWN) | k141_1487176 | k141_1487176_35 | 32423 | 33958 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_1487176 | k141_1487176_36 | 33958 | 34923 | - | GT8 |
Gene ID: k141_1487176_23
Type: TC
Location: 19335 - 20108 (-)
Type: TC
Location: 19335 - 20108 (-)
Gene ID: k141_1487176_24
Type: pfam
Location: 20279 - 21517 (-)
Type: pfam
Location: 20279 - 21517 (-)
Gene ID: k141_1487176_25
Type: pfam
Location: 21514 - 24207 (-)
Type: pfam
Location: 21514 - 24207 (-)
Gene ID: k141_1487176_26
Type: CAZyme
Location: 24276 - 25349 (-)
Type: CAZyme
Location: 24276 - 25349 (-)
Gene ID: k141_1487176_27
Type: CAZyme
Location: 25359 - 26273 (-)
Type: CAZyme
Location: 25359 - 26273 (-)
Gene ID: k141_1487176_28
Type:
Location: 26415 - 26618 (+)
Type:
Location: 26415 - 26618 (+)
Gene ID: k141_1487176_29
Type: pfam
Location: 26622 - 27473 (-)
Type: pfam
Location: 26622 - 27473 (-)
Gene ID: k141_1487176_30
Type: CAZyme
Location: 27568 - 28740 (+)
Type: CAZyme
Location: 27568 - 28740 (+)
Gene ID: k141_1487176_31
Type: CAZyme
Location: 28741 - 29601 (-)
Type: CAZyme
Location: 28741 - 29601 (-)
Gene ID: k141_1487176_32
Type: CAZyme
Location: 29598 - 30857 (-)
Type: CAZyme
Location: 29598 - 30857 (-)
Gene ID: k141_1487176_33
Type: CAZyme
Location: 30854 - 31618 (-)
Type: CAZyme
Location: 30854 - 31618 (-)
Gene ID: k141_1487176_34
Type: CAZyme
Location: 31608 - 32426 (-)
Type: CAZyme
Location: 31608 - 32426 (-)
Gene ID: k141_1487176_35
Type:
Location: 32423 - 33958 (-)
Type:
Location: 32423 - 33958 (-)
Gene ID: k141_1487176_36
Type: CAZyme
Location: 33958 - 34923 (-)
Type: CAZyme
Location: 33958 - 34923 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_F
Species
Treponema_F sp017629095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.