Cluster: CGMR055558_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR055558
- CGC Family ID: CGCFAM_07236
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_235998 | k141_235998_6 | 5177 | 6118 | - | 2.A.7.18.1 |
| TF | k141_235998 | k141_235998_7 | 6115 | 7905 | - | TrmB |
| pfam | k141_235998 | k141_235998_8 | 8082 | 9134 | + | Glycos_transf_2 | Glyco_tranf_2_3 |
| CAZyme | k141_235998 | k141_235998_9 | 9141 | 10277 | - | GT4 |
| pfam | k141_235998 | k141_235998_10 | 10289 | 11350 | - | Glycos_transf_2 |
| CAZyme | k141_235998 | k141_235998_11 | 11350 | 13737 | - | GT4 |
Gene ID: k141_235998_6
Type: TC
Location: 5177 - 6118 (-)
Type: TC
Location: 5177 - 6118 (-)
Gene ID: k141_235998_7
Type: TF
Location: 6115 - 7905 (-)
Type: TF
Location: 6115 - 7905 (-)
Gene ID: k141_235998_8
Type: pfam
Location: 8082 - 9134 (+)
Type: pfam
Location: 8082 - 9134 (+)
Gene ID: k141_235998_9
Type: CAZyme
Location: 9141 - 10277 (-)
Type: CAZyme
Location: 9141 - 10277 (-)
Gene ID: k141_235998_10
Type: pfam
Location: 10289 - 11350 (-)
Type: pfam
Location: 10289 - 11350 (-)
Gene ID: k141_235998_11
Type: CAZyme
Location: 11350 - 13737 (-)
Type: CAZyme
Location: 11350 - 13737 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Scrofimicrobium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.