Cluster: CGMR054953_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR054953
- CGC Family ID: CGCFAM_04650
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_28530 | k141_28530_9 | 8216 | 8554 | + | 1.E.40.3.1 |
| pfam | k141_28530 | k141_28530_10 | 8551 | 9390 | + | MTHFR |
| pfam | k141_28530 | k141_28530_11 | 9542 | 10243 | - | 5-FTHF_cyc-lig |
| CAZyme | k141_28530 | k141_28530_12 | 10359 | 12272 | + | GH23 |
Gene ID: k141_28530_9
Type: TC
Location: 8216 - 8554 (+)
Type: TC
Location: 8216 - 8554 (+)
Gene ID: k141_28530_10
Type: pfam
Location: 8551 - 9390 (+)
Type: pfam
Location: 8551 - 9390 (+)
Gene ID: k141_28530_11
Type: pfam
Location: 9542 - 10243 (-)
Type: pfam
Location: 9542 - 10243 (-)
Gene ID: k141_28530_12
Type: CAZyme
Location: 10359 - 12272 (+)
Type: CAZyme
Location: 10359 - 12272 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Alcaligenes
Species
Alcaligenes faecalis_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.