Cluster: CGMR054953_CGC7
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR054953
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_57003 | k141_57003_78 | 91056 | 92282 | + | 9.B.157.1.1 |
| pfam | k141_57003 | k141_57003_79 | 92454 | 93620 | + | Tubulin | FtsZ_C |
| CAZyme | k141_57003 | k141_57003_80 | 93831 | 94754 | + | CE11 |
| pfam | k141_57003 | k141_57003_81 | 94788 | 95270 | - | DciA |
| STP | k141_57003 | k141_57003_82 | 95289 | 96221 | + | Peptidase_M23 |
| TC | k141_57003 | k141_57003_83 | 96341 | 99067 | + | 3.A.5.1.1 |
| pfam | k141_57003 | k141_57003_84 | 99283 | 100176 | + | Shikimate_DH | NAD_binding_2 | F420_oxidored | DUF1932 |
| TC | k141_57003 | k141_57003_85 | 100288 | 101769 | - | 1.A.26.1.3 |
| pfam | k141_57003 | k141_57003_86 | 101791 | 102192 | - | 4HBT |
| peptidase | k141_57003 | k141_57003_87 | 102321 | 103520 | - | M20.UPD |
| TC | k141_57003 | k141_57003_88 | 103601 | 105298 | + | 4.C.1.1.4 |
| pfam | k141_57003 | k141_57003_89 | 105468 | 106331 | - | Inositol_P |
| pfam | k141_57003 | k141_57003_90 | 106464 | 108329 | + | FAD_binding_2 | GIDA | DAO | Methyltransf_30 | NAD_binding_8 |
| CAZyme | k141_57003 | k141_57003_91 | 108421 | 110649 | + | GH31_6 |
| TC | k141_57003 | k141_57003_92 | 111237 | 112247 | + | 3.A.1.24.5 |
| TC | k141_57003 | k141_57003_93 | 112244 | 112903 | + | 3.A.1.24.5 |
| TC | k141_57003 | k141_57003_94 | 112954 | 113745 | + | 3.A.1.24.5 |
| TC | k141_57003 | k141_57003_95 | 113946 | 114704 | + | 3.A.1.3.2 |
| TC | k141_57003 | k141_57003_96 | 114878 | 115657 | + | 3.A.1.3.2 |
| TC | k141_57003 | k141_57003_97 | 115654 | 116382 | + | 3.A.1.3.2 |
Gene ID: k141_57003_78
Type: TC
Location: 91056 - 92282 (+)
Type: TC
Location: 91056 - 92282 (+)
Gene ID: k141_57003_79
Type: pfam
Location: 92454 - 93620 (+)
Type: pfam
Location: 92454 - 93620 (+)
Gene ID: k141_57003_80
Type: CAZyme
Location: 93831 - 94754 (+)
Type: CAZyme
Location: 93831 - 94754 (+)
Gene ID: k141_57003_81
Type: pfam
Location: 94788 - 95270 (-)
Type: pfam
Location: 94788 - 95270 (-)
Gene ID: k141_57003_82
Type: STP
Location: 95289 - 96221 (+)
Type: STP
Location: 95289 - 96221 (+)
Gene ID: k141_57003_83
Type: TC
Location: 96341 - 99067 (+)
Type: TC
Location: 96341 - 99067 (+)
Gene ID: k141_57003_84
Type: pfam
Location: 99283 - 100176 (+)
Type: pfam
Location: 99283 - 100176 (+)
Gene ID: k141_57003_85
Type: TC
Location: 100288 - 101769 (-)
Type: TC
Location: 100288 - 101769 (-)
Gene ID: k141_57003_86
Type: pfam
Location: 101791 - 102192 (-)
Type: pfam
Location: 101791 - 102192 (-)
Gene ID: k141_57003_87
Type: peptidase
Location: 102321 - 103520 (-)
Type: peptidase
Location: 102321 - 103520 (-)
Gene ID: k141_57003_88
Type: TC
Location: 103601 - 105298 (+)
Type: TC
Location: 103601 - 105298 (+)
Gene ID: k141_57003_89
Type: pfam
Location: 105468 - 106331 (-)
Type: pfam
Location: 105468 - 106331 (-)
Gene ID: k141_57003_90
Type: pfam
Location: 106464 - 108329 (+)
Type: pfam
Location: 106464 - 108329 (+)
Gene ID: k141_57003_91
Type: CAZyme
Location: 108421 - 110649 (+)
Type: CAZyme
Location: 108421 - 110649 (+)
Gene ID: k141_57003_92
Type: TC
Location: 111237 - 112247 (+)
Type: TC
Location: 111237 - 112247 (+)
Gene ID: k141_57003_93
Type: TC
Location: 112244 - 112903 (+)
Type: TC
Location: 112244 - 112903 (+)
Gene ID: k141_57003_94
Type: TC
Location: 112954 - 113745 (+)
Type: TC
Location: 112954 - 113745 (+)
Gene ID: k141_57003_95
Type: TC
Location: 113946 - 114704 (+)
Type: TC
Location: 113946 - 114704 (+)
Gene ID: k141_57003_96
Type: TC
Location: 114878 - 115657 (+)
Type: TC
Location: 114878 - 115657 (+)
Gene ID: k141_57003_97
Type: TC
Location: 115654 - 116382 (+)
Type: TC
Location: 115654 - 116382 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Alcaligenes
Species
Alcaligenes faecalis_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.