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Cluster: CGMR054477_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_7026 k141_7026_57 52297 53637 - GH4
TC k141_7026 k141_7026_58 53694 54986 - 4.A.1.1.8
TC k141_7026 k141_7026_59 55009 55245 - 4.A.1.1.16
TF k141_7026 k141_7026_60 55443 55913 - MarR
pfam k141_7026 k141_7026_61 55929 56636 - R3H | KH_KhpA-B | Jag_N
TC k141_7026 k141_7026_62 56902 57753 + 8.A.5.1.4
peptidase k141_7026 k141_7026_63 57776 59692 + M13.UPW
NULL(UNKNOWN) k141_7026 k141_7026_64 59821 60285 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_7026 k141_7026_65 60334 61905 - 2.A.36.3.2
TC k141_7026 k141_7026_66 61963 62436 - 3.A.1.28.2
Gene ID: k141_7026_57
Type: CAZyme
Location: 52297 - 53637 (-)
Gene ID: k141_7026_58
Type: TC
Location: 53694 - 54986 (-)
Gene ID: k141_7026_59
Type: TC
Location: 55009 - 55245 (-)
Gene ID: k141_7026_60
Type: TF
Location: 55443 - 55913 (-)
Gene ID: k141_7026_61
Type: pfam
Location: 55929 - 56636 (-)
Gene ID: k141_7026_62
Type: TC
Location: 56902 - 57753 (+)
Gene ID: k141_7026_63
Type: peptidase
Location: 57776 - 59692 (+)
Gene ID: k141_7026_64
Type:
Location: 59821 - 60285 (+)
Gene ID: k141_7026_65
Type: TC
Location: 60334 - 61905 (-)
Gene ID: k141_7026_66
Type: TC
Location: 61963 - 62436 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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