Cluster: CGMR053790_CGC22
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: alpha-glucan/beta-mannan
- Genome ID: CGMR053790
- CGC Family ID: CGCFAM_01242
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_124598 | k141_124598_1 | 1 | 711 | + | 4.B.1.1.4 |
| TC | k141_124598 | k141_124598_2 | 779 | 1483 | + | 1.A.14.3.7 |
| pfam | k141_124598 | k141_124598_3 | 1554 | 2270 | + | Lysine_decarbox | LDcluster4 |
| CAZyme | k141_124598 | k141_124598_4 | 2325 | 3359 | - | GH33 |
| CAZyme | k141_124598 | k141_124598_5 | 3453 | 6257 | - | GH13_10 |
| pfam | k141_124598 | k141_124598_6 | 6347 | 7387 | - | SusE |
| TC | k141_124598 | k141_124598_7 | 7389 | 9014 | - | 8.A.46.1.1 |
| TC | k141_124598 | k141_124598_8 | 9025 | 11943 | - | 1.B.14.6.1 |
| TF | k141_124598 | k141_124598_9 | 12168 | 13187 | + | LacI |
| TC | k141_124598 | k141_124598_10 | 13350 | 14696 | + | 2.A.2.6.3 |
| pfam | k141_124598 | k141_124598_11 | 14702 | 15358 | + | Hydrolase | HAD_2 |
| CAZyme | k141_124598 | k141_124598_12 | 15386 | 17683 | + | GH65 |
| CAZyme | k141_124598 | k141_124598_13 | 18062 | 19915 | + | GH13_46 |
| CAZyme | k141_124598 | k141_124598_14 | 20245 | 22422 | + | GH97 |
| CAZyme | k141_124598 | k141_124598_15 | 22585 | 24240 | + | GH13_19 |
| CAZyme | k141_124598 | k141_124598_16 | 24266 | 25654 | + | GH13 |
Gene ID: k141_124598_1
Type: TC
Location: 1 - 711 (+)
Type: TC
Location: 1 - 711 (+)
Gene ID: k141_124598_2
Type: TC
Location: 779 - 1483 (+)
Type: TC
Location: 779 - 1483 (+)
Gene ID: k141_124598_3
Type: pfam
Location: 1554 - 2270 (+)
Type: pfam
Location: 1554 - 2270 (+)
Gene ID: k141_124598_4
Type: CAZyme
Location: 2325 - 3359 (-)
Type: CAZyme
Location: 2325 - 3359 (-)
Gene ID: k141_124598_5
Type: CAZyme
Location: 3453 - 6257 (-)
Type: CAZyme
Location: 3453 - 6257 (-)
Gene ID: k141_124598_6
Type: pfam
Location: 6347 - 7387 (-)
Type: pfam
Location: 6347 - 7387 (-)
Gene ID: k141_124598_7
Type: TC
Location: 7389 - 9014 (-)
Type: TC
Location: 7389 - 9014 (-)
Gene ID: k141_124598_8
Type: TC
Location: 9025 - 11943 (-)
Type: TC
Location: 9025 - 11943 (-)
Gene ID: k141_124598_9
Type: TF
Location: 12168 - 13187 (+)
Type: TF
Location: 12168 - 13187 (+)
Gene ID: k141_124598_10
Type: TC
Location: 13350 - 14696 (+)
Type: TC
Location: 13350 - 14696 (+)
Gene ID: k141_124598_11
Type: pfam
Location: 14702 - 15358 (+)
Type: pfam
Location: 14702 - 15358 (+)
Gene ID: k141_124598_12
Type: CAZyme
Location: 15386 - 17683 (+)
Type: CAZyme
Location: 15386 - 17683 (+)
Gene ID: k141_124598_13
Type: CAZyme
Location: 18062 - 19915 (+)
Type: CAZyme
Location: 18062 - 19915 (+)
Gene ID: k141_124598_14
Type: CAZyme
Location: 20245 - 22422 (+)
Type: CAZyme
Location: 20245 - 22422 (+)
Gene ID: k141_124598_15
Type: CAZyme
Location: 22585 - 24240 (+)
Type: CAZyme
Location: 22585 - 24240 (+)
Gene ID: k141_124598_16
Type: CAZyme
Location: 24266 - 25654 (+)
Type: CAZyme
Location: 24266 - 25654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Empedobacter
Species
Empedobacter falsenii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.