Cluster: CGMR053790_CGC10
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 10
- Substrate: pectin
- Genome ID: CGMR053790
- CGC Family ID: CGCFAM_00821
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_203240 | k141_203240_8 | 9188 | 12268 | + | 1.B.14.6.1 |
| TC | k141_203240 | k141_203240_9 | 12281 | 13891 | + | 8.A.46.1.6 |
| TC | k141_203240 | k141_203240_10 | 14092 | 17325 | + | 1.B.14.6.1 |
| TC | k141_203240 | k141_203240_11 | 17344 | 19167 | + | 8.A.46.1.3 |
| pfam | k141_203240 | k141_203240_12 | 19180 | 20871 | + | DUF4957 |
| CAZyme | k141_203240 | k141_203240_13 | 20886 | 23096 | + | CE8 | PL1_2 |
| pfam | k141_203240 | k141_203240_14 | 23127 | 24110 | + | DUF4861 |
| CAZyme | k141_203240 | k141_203240_15 | 24121 | 25335 | + | GH105 |
| CAZyme | k141_203240 | k141_203240_16 | 25341 | 26969 | + | CBM91 | GH43_10 |
| CAZyme | k141_203240 | k141_203240_17 | 26969 | 27781 | + | CE12 |
| CAZyme | k141_203240 | k141_203240_18 | 27781 | 29448 | + | GH28 |
| peptidase | k141_203240 | k141_203240_19 | 29432 | 30334 | + | S09.UNW |
| CAZyme | k141_203240 | k141_203240_20 | 30331 | 31305 | + | CE8 |
| CAZyme | k141_203240 | k141_203240_21 | 31307 | 32047 | + | CE12 |
| peptidase | k141_203240 | k141_203240_22 | 32131 | 32982 | - | S09.UNW |
| CAZyme | k141_203240 | k141_203240_23 | 33086 | 34540 | - | GH30_1 |
| pfam | k141_203240 | k141_203240_24 | 34546 | 35385 | - | Exo_endo_phos |
| CAZyme | k141_203240 | k141_203240_25 | 35479 | 37725 | - | GH3 |
| CAZyme | k141_203240 | k141_203240_26 | 37736 | 39076 | - | GH144 |
| TC | k141_203240 | k141_203240_27 | 39076 | 40509 | - | 8.A.46.1.5 |
| TC | k141_203240 | k141_203240_28 | 40529 | 43459 | - | 1.B.14.6.1 |
Gene ID: k141_203240_8
Type: TC
Location: 9188 - 12268 (+)
Type: TC
Location: 9188 - 12268 (+)
Gene ID: k141_203240_9
Type: TC
Location: 12281 - 13891 (+)
Type: TC
Location: 12281 - 13891 (+)
Gene ID: k141_203240_10
Type: TC
Location: 14092 - 17325 (+)
Type: TC
Location: 14092 - 17325 (+)
Gene ID: k141_203240_11
Type: TC
Location: 17344 - 19167 (+)
Type: TC
Location: 17344 - 19167 (+)
Gene ID: k141_203240_12
Type: pfam
Location: 19180 - 20871 (+)
Type: pfam
Location: 19180 - 20871 (+)
Gene ID: k141_203240_13
Type: CAZyme
Location: 20886 - 23096 (+)
Type: CAZyme
Location: 20886 - 23096 (+)
Gene ID: k141_203240_14
Type: pfam
Location: 23127 - 24110 (+)
Type: pfam
Location: 23127 - 24110 (+)
Gene ID: k141_203240_15
Type: CAZyme
Location: 24121 - 25335 (+)
Type: CAZyme
Location: 24121 - 25335 (+)
Gene ID: k141_203240_16
Type: CAZyme
Location: 25341 - 26969 (+)
Type: CAZyme
Location: 25341 - 26969 (+)
Gene ID: k141_203240_17
Type: CAZyme
Location: 26969 - 27781 (+)
Type: CAZyme
Location: 26969 - 27781 (+)
Gene ID: k141_203240_18
Type: CAZyme
Location: 27781 - 29448 (+)
Type: CAZyme
Location: 27781 - 29448 (+)
Gene ID: k141_203240_19
Type: peptidase
Location: 29432 - 30334 (+)
Type: peptidase
Location: 29432 - 30334 (+)
Gene ID: k141_203240_20
Type: CAZyme
Location: 30331 - 31305 (+)
Type: CAZyme
Location: 30331 - 31305 (+)
Gene ID: k141_203240_21
Type: CAZyme
Location: 31307 - 32047 (+)
Type: CAZyme
Location: 31307 - 32047 (+)
Gene ID: k141_203240_22
Type: peptidase
Location: 32131 - 32982 (-)
Type: peptidase
Location: 32131 - 32982 (-)
Gene ID: k141_203240_23
Type: CAZyme
Location: 33086 - 34540 (-)
Type: CAZyme
Location: 33086 - 34540 (-)
Gene ID: k141_203240_24
Type: pfam
Location: 34546 - 35385 (-)
Type: pfam
Location: 34546 - 35385 (-)
Gene ID: k141_203240_25
Type: CAZyme
Location: 35479 - 37725 (-)
Type: CAZyme
Location: 35479 - 37725 (-)
Gene ID: k141_203240_26
Type: CAZyme
Location: 37736 - 39076 (-)
Type: CAZyme
Location: 37736 - 39076 (-)
Gene ID: k141_203240_27
Type: TC
Location: 39076 - 40509 (-)
Type: TC
Location: 39076 - 40509 (-)
Gene ID: k141_203240_28
Type: TC
Location: 40529 - 43459 (-)
Type: TC
Location: 40529 - 43459 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Empedobacter
Species
Empedobacter falsenii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.