Cluster: CGMR053434_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR053434
- CGC Family ID: CGCFAM_00321
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_54625 | k141_54625_5 | 4452 | 6695 | + | GH78 |
| CAZyme | k141_54625 | k141_54625_6 | 6728 | 8494 | + | GH78 |
| pfam | k141_54625 | k141_54625_7 | 8641 | 10119 | + | FGGY_N | FGGY_C |
| pfam | k141_54625 | k141_54625_8 | 10248 | 11501 | + | RhaA |
| TC | k141_54625 | k141_54625_9 | 11593 | 12618 | + | 2.A.7.6.1 |
Gene ID: k141_54625_5
Type: CAZyme
Location: 4452 - 6695 (+)
Type: CAZyme
Location: 4452 - 6695 (+)
Gene ID: k141_54625_6
Type: CAZyme
Location: 6728 - 8494 (+)
Type: CAZyme
Location: 6728 - 8494 (+)
Gene ID: k141_54625_7
Type: pfam
Location: 8641 - 10119 (+)
Type: pfam
Location: 8641 - 10119 (+)
Gene ID: k141_54625_8
Type: pfam
Location: 10248 - 11501 (+)
Type: pfam
Location: 10248 - 11501 (+)
Gene ID: k141_54625_9
Type: TC
Location: 11593 - 12618 (+)
Type: TC
Location: 11593 - 12618 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_54625_7 | vegetarian > omnivore | 1.39362 | 0.04329 |
| k141_54625_7 | vegetarian > vegan | 1.15847 | 0.01047 |