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Cluster: CGMR053434_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_58082 k141_58082_8 3408 4946 + GH32
CAZyme k141_58082 k141_58082_9 5226 6458 - GT30
TF k141_58082 k141_58082_10 6467 7138 - 0037767
CAZyme k141_58082 k141_58082_11 7344 8108 - GT2
NULL(UNKNOWN) k141_58082 k141_58082_12 8160 8447 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_58082 k141_58082_13 8799 10139 + 2.A.38.1.1
pfam k141_58082 k141_58082_14 10216 11730 + GH3 | GH3_M | GH3_C
CAZyme k141_58082 k141_58082_15 11750 12928 + GT4
pfam k141_58082 k141_58082_16 13035 13646 + dNK
pfam k141_58082 k141_58082_17 13646 15007 + Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N
CAZyme k141_58082 k141_58082_18 15263 17128 + GH2
TC k141_58082 k141_58082_19 17363 18676 + 3.A.5.1.1
pfam k141_58082 k141_58082_20 18694 19569 + THF_DHG_CYH | THF_DHG_CYH_C
pfam k141_58082 k141_58082_21 19832 22324 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
TC k141_58082 k141_58082_22 22450 22821 + 1.E.14.1.16
TC k141_58082 k141_58082_23 22818 23507 + 2.A.122.1.1
Gene ID: k141_58082_8
Type: CAZyme
Location: 3408 - 4946 (+)
Gene ID: k141_58082_9
Type: CAZyme
Location: 5226 - 6458 (-)
Gene ID: k141_58082_10
Type: TF
Location: 6467 - 7138 (-)
Gene ID: k141_58082_11
Type: CAZyme
Location: 7344 - 8108 (-)
Gene ID: k141_58082_12
Type:
Location: 8160 - 8447 (-)
Gene ID: k141_58082_13
Type: TC
Location: 8799 - 10139 (+)
Gene ID: k141_58082_14
Type: pfam
Location: 10216 - 11730 (+)
Gene ID: k141_58082_15
Type: CAZyme
Location: 11750 - 12928 (+)
Gene ID: k141_58082_16
Type: pfam
Location: 13035 - 13646 (+)
Gene ID: k141_58082_17
Type: pfam
Location: 13646 - 15007 (+)
Gene ID: k141_58082_18
Type: CAZyme
Location: 15263 - 17128 (+)
Gene ID: k141_58082_19
Type: TC
Location: 17363 - 18676 (+)
Gene ID: k141_58082_20
Type: pfam
Location: 18694 - 19569 (+)
Gene ID: k141_58082_21
Type: pfam
Location: 19832 - 22324 (+)
Gene ID: k141_58082_22
Type: TC
Location: 22450 - 22821 (+)
Gene ID: k141_58082_23
Type: TC
Location: 22818 - 23507 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_58082_20 vegetarian > omnivore 1.26600 0.04329
k141_58082_20 vegetarian > vegan 1.50714 0.01047

🧭 Explore Read Mapping of CGC

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