Cluster: CGMR053434_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR053434
- CGC Family ID: CGCFAM_01376
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_75036 | k141_75036_1 | 1 | 405 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | k141_75036 | k141_75036_2 | 894 | 1394 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_75036 | k141_75036_3 | 1809 | 5075 | + | GH106 |
| TC | k141_75036 | k141_75036_4 | 5240 | 5668 | - | 2.A.81.1.2 |
Gene ID: k141_75036_1
Type: TC
Location: 1 - 405 (-)
Type: TC
Location: 1 - 405 (-)
Gene ID: k141_75036_2
Type:
Location: 894 - 1394 (-)
Type:
Location: 894 - 1394 (-)
Gene ID: k141_75036_3
Type: CAZyme
Location: 1809 - 5075 (+)
Type: CAZyme
Location: 1809 - 5075 (+)
Gene ID: k141_75036_4
Type: TC
Location: 5240 - 5668 (-)
Type: TC
Location: 5240 - 5668 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_75036_4 | vegetarian > omnivore | 1.17792 | 0.04329 |
| k141_75036_4 | vegetarian > vegan | 1.39611 | 0.01047 |