Cluster: CGMR053434_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: xylan
- Genome ID: CGMR053434
- CGC Family ID: CGCFAM_02296
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_116935 | k141_116935_18 | 24391 | 26856 | + | GH95 |
| pfam | k141_116935 | k141_116935_19 | 26888 | 28378 | + | FGGY_N | FGGY_C |
| NULL(UNKNOWN) | k141_116935 | k141_116935_20 | 28421 | 29734 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_116935 | k141_116935_21 | 29796 | 31205 | + | 2.A.1.1.3 |
| CAZyme | k141_116935 | k141_116935_22 | 31205 | 33859 | + | GH3 |
| CAZyme | k141_116935 | k141_116935_23 | 34321 | 36315 | + | GH127 |
Gene ID: k141_116935_18
Type: CAZyme
Location: 24391 - 26856 (+)
Type: CAZyme
Location: 24391 - 26856 (+)
Gene ID: k141_116935_19
Type: pfam
Location: 26888 - 28378 (+)
Type: pfam
Location: 26888 - 28378 (+)
Gene ID: k141_116935_20
Type:
Location: 28421 - 29734 (+)
Type:
Location: 28421 - 29734 (+)
Gene ID: k141_116935_21
Type: TC
Location: 29796 - 31205 (+)
Type: TC
Location: 29796 - 31205 (+)
Gene ID: k141_116935_22
Type: CAZyme
Location: 31205 - 33859 (+)
Type: CAZyme
Location: 31205 - 33859 (+)
Gene ID: k141_116935_23
Type: CAZyme
Location: 34321 - 36315 (+)
Type: CAZyme
Location: 34321 - 36315 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_116935_20 | vegetarian > omnivore | 1.13565 | 0.04329 |
| k141_116935_20 | vegetarian > vegan | 1.59094 | 0.01047 |