Cluster: CGMR053389_CGC20
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR053389
- CGC Family ID: CGCFAM_01226
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_83833 | k141_83833_26 | 31928 | 32839 | - | 9.B.126.2.5 |
| pfam | k141_83833 | k141_83833_27 | 32855 | 33706 | - | NERD |
| pfam | k141_83833 | k141_83833_28 | 33699 | 34829 | - | Epimerase_2 |
| CAZyme | k141_83833 | k141_83833_29 | 35024 | 35965 | + | GT2 |
| TC | k141_83833 | k141_83833_30 | 36051 | 37406 | - | 2.A.8.1.1 |
| pfam | k141_83833 | k141_83833_31 | 37565 | 38017 | - | Usp |
| TC | k141_83833 | k141_83833_32 | 38475 | 39800 | - | 3.A.18.1.1 |
| pfam | k141_83833 | k141_83833_33 | 39813 | 40817 | - | GFO_IDH_MocA | NAD_binding_3 | GFO_IDH_MocA_C3 |
| pfam | k141_83833 | k141_83833_34 | 40980 | 41342 | + | DUF4828 |
| CAZyme | k141_83833 | k141_83833_35 | 41416 | 42177 | - | GH25 |
| TF | k141_83833 | k141_83833_36 | 42233 | 43093 | - | HTH_6 |
| pfam | k141_83833 | k141_83833_37 | 43312 | 44859 | + | FGGY_N | FGGY_C |
| TC | k141_83833 | k141_83833_38 | 45030 | 46388 | + | 2.A.8.1.1 |
| TC | k141_83833 | k141_83833_39 | 46525 | 47844 | + | 2.A.3.8.12 |
| TC | k141_83833 | k141_83833_40 | 47893 | 49242 | - | 2.A.1.7.5 |
Gene ID: k141_83833_26
Type: TC
Location: 31928 - 32839 (-)
Type: TC
Location: 31928 - 32839 (-)
Gene ID: k141_83833_27
Type: pfam
Location: 32855 - 33706 (-)
Type: pfam
Location: 32855 - 33706 (-)
Gene ID: k141_83833_28
Type: pfam
Location: 33699 - 34829 (-)
Type: pfam
Location: 33699 - 34829 (-)
Gene ID: k141_83833_29
Type: CAZyme
Location: 35024 - 35965 (+)
Type: CAZyme
Location: 35024 - 35965 (+)
Gene ID: k141_83833_30
Type: TC
Location: 36051 - 37406 (-)
Type: TC
Location: 36051 - 37406 (-)
Gene ID: k141_83833_31
Type: pfam
Location: 37565 - 38017 (-)
Type: pfam
Location: 37565 - 38017 (-)
Gene ID: k141_83833_32
Type: TC
Location: 38475 - 39800 (-)
Type: TC
Location: 38475 - 39800 (-)
Gene ID: k141_83833_33
Type: pfam
Location: 39813 - 40817 (-)
Type: pfam
Location: 39813 - 40817 (-)
Gene ID: k141_83833_34
Type: pfam
Location: 40980 - 41342 (+)
Type: pfam
Location: 40980 - 41342 (+)
Gene ID: k141_83833_35
Type: CAZyme
Location: 41416 - 42177 (-)
Type: CAZyme
Location: 41416 - 42177 (-)
Gene ID: k141_83833_36
Type: TF
Location: 42233 - 43093 (-)
Type: TF
Location: 42233 - 43093 (-)
Gene ID: k141_83833_37
Type: pfam
Location: 43312 - 44859 (+)
Type: pfam
Location: 43312 - 44859 (+)
Gene ID: k141_83833_38
Type: TC
Location: 45030 - 46388 (+)
Type: TC
Location: 45030 - 46388 (+)
Gene ID: k141_83833_39
Type: TC
Location: 46525 - 47844 (+)
Type: TC
Location: 46525 - 47844 (+)
Gene ID: k141_83833_40
Type: TC
Location: 47893 - 49242 (-)
Type: TC
Location: 47893 - 49242 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Levilactobacillus
Species
Levilactobacillus brevis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.