Cluster: CGMR052682_CGC38
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR052682
- CGC Family ID: CGCFAM_00473
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1153 | k141_1153_219 | 232829 | 233317 | + | 5.A.3.11.1 |
| STP | k141_1153 | k141_1153_220 | 233421 | 234680 | - | Aminotran_1_2 |
| CAZyme | k141_1153 | k141_1153_221 | 234855 | 236885 | - | GH13_19 |
| CAZyme | k141_1153 | k141_1153_222 | 237465 | 238028 | + | GH73 |
| TF | k141_1153 | k141_1153_223 | 238089 | 239267 | - | HTH_AraC | HTH_AraC |
| TC | k141_1153 | k141_1153_224 | 239389 | 240567 | - | 3.A.1.2.4 |
| TC | k141_1153 | k141_1153_225 | 240548 | 242086 | - | 3.A.1.2.4 |
| TC | k141_1153 | k141_1153_226 | 242151 | 243143 | - | 3.A.1.2.4 |
| NULL(UNKNOWN) | k141_1153 | k141_1153_227 | 243518 | 244840 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_1153 | k141_1153_228 | 244937 | 246391 | + | FGGY_N | FGGY_C |
| TC | k141_1153 | k141_1153_229 | 246559 | 246939 | + | 9.B.44.1.1 |
| TC | k141_1153 | k141_1153_230 | 246942 | 247937 | - | 9.B.97.1.1 |
Gene ID: k141_1153_219
Type: TC
Location: 232829 - 233317 (+)
Type: TC
Location: 232829 - 233317 (+)
Gene ID: k141_1153_220
Type: STP
Location: 233421 - 234680 (-)
Type: STP
Location: 233421 - 234680 (-)
Gene ID: k141_1153_221
Type: CAZyme
Location: 234855 - 236885 (-)
Type: CAZyme
Location: 234855 - 236885 (-)
Gene ID: k141_1153_222
Type: CAZyme
Location: 237465 - 238028 (+)
Type: CAZyme
Location: 237465 - 238028 (+)
Gene ID: k141_1153_223
Type: TF
Location: 238089 - 239267 (-)
Type: TF
Location: 238089 - 239267 (-)
Gene ID: k141_1153_224
Type: TC
Location: 239389 - 240567 (-)
Type: TC
Location: 239389 - 240567 (-)
Gene ID: k141_1153_225
Type: TC
Location: 240548 - 242086 (-)
Type: TC
Location: 240548 - 242086 (-)
Gene ID: k141_1153_226
Type: TC
Location: 242151 - 243143 (-)
Type: TC
Location: 242151 - 243143 (-)
Gene ID: k141_1153_227
Type:
Location: 243518 - 244840 (+)
Type:
Location: 243518 - 244840 (+)
Gene ID: k141_1153_228
Type: pfam
Location: 244937 - 246391 (+)
Type: pfam
Location: 244937 - 246391 (+)
Gene ID: k141_1153_229
Type: TC
Location: 246559 - 246939 (+)
Type: TC
Location: 246559 - 246939 (+)
Gene ID: k141_1153_230
Type: TC
Location: 246942 - 247937 (-)
Type: TC
Location: 246942 - 247937 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella oxytoca
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_1153_224 | vegan > omnivore | 1.43154 | 0.04974 |
| k141_1153_224 | vegetarian > omnivore | 1.49237 | 0.04907 |