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Cluster: CGMR052682_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_1538 k141_1538_116 123635 125137 + 2.A.1.6.4
TF k141_1538 k141_1538_117 125189 126130 - HTH_AraC | HTH_AraC
CAZyme k141_1538 k141_1538_118 126369 127715 + GH4
pfam k141_1538 k141_1538_119 128098 128403 - MerR_2
pfam k141_1538 k141_1538_120 128403 129320 - DnaJ | DnaJ_C
TC k141_1538 k141_1538_121 129470 130153 - 2.A.109.1.5
pfam k141_1538 k141_1538_122 130377 131159 + DSBA | Thioredoxin_4 | ScsC_N
STP k141_1538 k141_1538_123 131228 131848 - TetR_N
TC k141_1538 k141_1538_124 131964 132551 + 2.A.37.1.1
pfam k141_1538 k141_1538_125 132950 135040 - DUF1176
NULL(UNKNOWN) k141_1538 k141_1538_126 135109 135699 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_1538 k141_1538_127 135726 137489 - 5.A.1.1.1
pfam k141_1538 k141_1538_128 137465 137788 - CutA1
TC k141_1538 k141_1538_129 137883 139184 - 2.A.13.1.1
pfam k141_1538 k141_1538_130 139303 140739 - Lyase_1 | FumaraseC_C
pfam k141_1538 k141_1538_131 141078 141554 + FxsA
TC k141_1538 k141_1538_132 141577 142836 - 2.A.3.13.1
Gene ID: k141_1538_116
Type: TC
Location: 123635 - 125137 (+)
Gene ID: k141_1538_117
Type: TF
Location: 125189 - 126130 (-)
Gene ID: k141_1538_118
Type: CAZyme
Location: 126369 - 127715 (+)
Gene ID: k141_1538_119
Type: pfam
Location: 128098 - 128403 (-)
Gene ID: k141_1538_120
Type: pfam
Location: 128403 - 129320 (-)
Gene ID: k141_1538_121
Type: TC
Location: 129470 - 130153 (-)
Gene ID: k141_1538_122
Type: pfam
Location: 130377 - 131159 (+)
Gene ID: k141_1538_123
Type: STP
Location: 131228 - 131848 (-)
Gene ID: k141_1538_124
Type: TC
Location: 131964 - 132551 (+)
Gene ID: k141_1538_125
Type: pfam
Location: 132950 - 135040 (-)
Gene ID: k141_1538_126
Type:
Location: 135109 - 135699 (-)
Gene ID: k141_1538_127
Type: TC
Location: 135726 - 137489 (-)
Gene ID: k141_1538_128
Type: pfam
Location: 137465 - 137788 (-)
Gene ID: k141_1538_129
Type: TC
Location: 137883 - 139184 (-)
Gene ID: k141_1538_130
Type: pfam
Location: 139303 - 140739 (-)
Gene ID: k141_1538_131
Type: pfam
Location: 141078 - 141554 (+)
Gene ID: k141_1538_132
Type: TC
Location: 141577 - 142836 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_1538_129 vegetarian > omnivore 1.94170 0.04592
k141_1538_131 vegan > omnivore 1.37871 0.04974
k141_1538_131 vegetarian > omnivore 1.72859 0.01294

🧭 Explore Read Mapping of CGC

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