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Cluster: CGMR052682_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_1274 k141_1274_124 123350 124750 - GH1
CAZyme k141_1274 k141_1274_125 124805 127000 - CBM35 | GH5_41
TC k141_1274 k141_1274_126 127013 128350 - 1.B.3.1.1
TC k141_1274 k141_1274_127 128574 129845 - 4.A.3.2.6
TC k141_1274 k141_1274_128 130020 130334 + 4.A.3.2.6
TC k141_1274 k141_1274_129 130344 131666 + 4.A.3.2.6
TC k141_1274 k141_1274_130 131690 132004 + 4.A.3.2.7
pfam k141_1274 k141_1274_131 132250 133164 + ROK
TF k141_1274 k141_1274_132 133221 134183 + LacI
TC k141_1274 k141_1274_133 134361 135278 + 3.A.1.15.7
TC k141_1274 k141_1274_134 135275 136096 + 3.A.1.15.7
TC k141_1274 k141_1274_135 136093 136941 + 3.A.1.15.7
TC k141_1274 k141_1274_136 136935 137789 + 3.A.1.15.7
pfam k141_1274 k141_1274_137 137967 138317 - YgbA_NO
pfam k141_1274 k141_1274_138 138394 138678 - Rdx
TC k141_1274 k141_1274_139 138894 141263 + 1.B.14.2.7
pfam k141_1274 k141_1274_140 141335 142375 + HemS | HemS | ChuX_HutX | ChuX_HutX
TC k141_1274 k141_1274_141 142372 143190 + 3.A.1.14.16
TC k141_1274 k141_1274_142 143190 144185 + 3.A.1.14.5
TC k141_1274 k141_1274_143 144178 144957 + 3.A.1.14.16
Gene ID: k141_1274_124
Type: CAZyme
Location: 123350 - 124750 (-)
Gene ID: k141_1274_125
Type: CAZyme
Location: 124805 - 127000 (-)
Gene ID: k141_1274_126
Type: TC
Location: 127013 - 128350 (-)
Gene ID: k141_1274_127
Type: TC
Location: 128574 - 129845 (-)
Gene ID: k141_1274_128
Type: TC
Location: 130020 - 130334 (+)
Gene ID: k141_1274_129
Type: TC
Location: 130344 - 131666 (+)
Gene ID: k141_1274_130
Type: TC
Location: 131690 - 132004 (+)
Gene ID: k141_1274_131
Type: pfam
Location: 132250 - 133164 (+)
Gene ID: k141_1274_132
Type: TF
Location: 133221 - 134183 (+)
Gene ID: k141_1274_133
Type: TC
Location: 134361 - 135278 (+)
Gene ID: k141_1274_134
Type: TC
Location: 135275 - 136096 (+)
Gene ID: k141_1274_135
Type: TC
Location: 136093 - 136941 (+)
Gene ID: k141_1274_136
Type: TC
Location: 136935 - 137789 (+)
Gene ID: k141_1274_137
Type: pfam
Location: 137967 - 138317 (-)
Gene ID: k141_1274_138
Type: pfam
Location: 138394 - 138678 (-)
Gene ID: k141_1274_139
Type: TC
Location: 138894 - 141263 (+)
Gene ID: k141_1274_140
Type: pfam
Location: 141335 - 142375 (+)
Gene ID: k141_1274_141
Type: TC
Location: 142372 - 143190 (+)
Gene ID: k141_1274_142
Type: TC
Location: 143190 - 144185 (+)
Gene ID: k141_1274_143
Type: TC
Location: 144178 - 144957 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_1274_132 vegetarian > omnivore 1.50773 0.04907
k141_1274_134 vegetarian > omnivore 1.16194 0.04592
k141_1274_134 vegetarian > vegan 1.35868 0.02041
k141_1274_136 vegetarian > omnivore 1.63788 0.01294
k141_1274_136 vegetarian > vegan 1.78472 0.01848

🧭 Explore Read Mapping of CGC

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