Cluster: CGMR051215_CGC3
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR051215
- CGC Family ID: CGCFAM_05619
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_57268 | k141_57268_13 | 8885 | 10282 | - | GH4 |
| TF | k141_57268 | k141_57268_14 | 10433 | 11299 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_57268 | k141_57268_15 | 11328 | 12446 | - | GH105 |
| TF | k141_57268 | k141_57268_16 | 12449 | 13987 | - | HTH_AraC |
| TC | k141_57268 | k141_57268_17 | 13989 | 15749 | - | 8.A.59.2.1 |
| STP | k141_57268 | k141_57268_18 | 15933 | 17279 | + | SBP_bac_1 |
| TC | k141_57268 | k141_57268_19 | 17306 | 18235 | + | 3.A.1.1.11 |
| TC | k141_57268 | k141_57268_20 | 18242 | 19096 | + | 3.A.1.1.11 |
| CAZyme | k141_57268 | k141_57268_21 | 19175 | 22318 | + | GH38 |
| CAZyme | k141_57268 | k141_57268_22 | 22433 | 25543 | + | GH38 |
| pfam | k141_57268 | k141_57268_23 | 25675 | 26217 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TC | k141_57268 | k141_57268_24 | 26237 | 27172 | + | 3.A.1.1.10 |
| TC | k141_57268 | k141_57268_25 | 27172 | 28038 | + | 3.A.1.1.10 |
| TC | k141_57268 | k141_57268_26 | 28082 | 29689 | + | 3.A.1.1.9 |
| TF | k141_57268 | k141_57268_27 | 29797 | 30711 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_57268 | k141_57268_28 | 30881 | 31963 | + | GH105 |
Gene ID: k141_57268_13
Type: CAZyme
Location: 8885 - 10282 (-)
Type: CAZyme
Location: 8885 - 10282 (-)
Gene ID: k141_57268_14
Type: TF
Location: 10433 - 11299 (+)
Type: TF
Location: 10433 - 11299 (+)
Gene ID: k141_57268_15
Type: CAZyme
Location: 11328 - 12446 (-)
Type: CAZyme
Location: 11328 - 12446 (-)
Gene ID: k141_57268_16
Type: TF
Location: 12449 - 13987 (-)
Type: TF
Location: 12449 - 13987 (-)
Gene ID: k141_57268_17
Type: TC
Location: 13989 - 15749 (-)
Type: TC
Location: 13989 - 15749 (-)
Gene ID: k141_57268_18
Type: STP
Location: 15933 - 17279 (+)
Type: STP
Location: 15933 - 17279 (+)
Gene ID: k141_57268_19
Type: TC
Location: 17306 - 18235 (+)
Type: TC
Location: 17306 - 18235 (+)
Gene ID: k141_57268_20
Type: TC
Location: 18242 - 19096 (+)
Type: TC
Location: 18242 - 19096 (+)
Gene ID: k141_57268_21
Type: CAZyme
Location: 19175 - 22318 (+)
Type: CAZyme
Location: 19175 - 22318 (+)
Gene ID: k141_57268_22
Type: CAZyme
Location: 22433 - 25543 (+)
Type: CAZyme
Location: 22433 - 25543 (+)
Gene ID: k141_57268_23
Type: pfam
Location: 25675 - 26217 (+)
Type: pfam
Location: 25675 - 26217 (+)
Gene ID: k141_57268_24
Type: TC
Location: 26237 - 27172 (+)
Type: TC
Location: 26237 - 27172 (+)
Gene ID: k141_57268_25
Type: TC
Location: 27172 - 28038 (+)
Type: TC
Location: 27172 - 28038 (+)
Gene ID: k141_57268_26
Type: TC
Location: 28082 - 29689 (+)
Type: TC
Location: 28082 - 29689 (+)
Gene ID: k141_57268_27
Type: TF
Location: 29797 - 30711 (-)
Type: TF
Location: 29797 - 30711 (-)
Gene ID: k141_57268_28
Type: CAZyme
Location: 30881 - 31963 (+)
Type: CAZyme
Location: 30881 - 31963 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Species
Lacrimispora xylanolytica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.