Cluster: CGMR051205_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR051205
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_166428 | k141_166428_85 | 98577 | 99341 | + | 9.B.18.1.2 |
| CAZyme | k141_166428 | k141_166428_86 | 99342 | 100451 | + | GT4 |
| CAZyme | k141_166428 | k141_166428_87 | 100448 | 101398 | + | GT2 |
| pfam | k141_166428 | k141_166428_88 | 101425 | 102450 | + | Sulfotransfer_3 |
| CAZyme | k141_166428 | k141_166428_89 | 102447 | 103616 | + | GT4 |
| pfam | k141_166428 | k141_166428_90 | 103613 | 105097 | + | O-ag_pol_Wzy |
| CAZyme | k141_166428 | k141_166428_91 | 105087 | 106091 | + | GT2 |
| TC | k141_166428 | k141_166428_92 | 106137 | 107573 | + | 2.A.66.2.1 |
| pfam | k141_166428 | k141_166428_93 | 107577 | 108059 | + | Hexapep |
| TC | k141_166428 | k141_166428_94 | 108664 | 109605 | - | 2.A.7.18.1 |
Gene ID: k141_166428_85
Type: TC
Location: 98577 - 99341 (+)
Type: TC
Location: 98577 - 99341 (+)
Gene ID: k141_166428_86
Type: CAZyme
Location: 99342 - 100451 (+)
Type: CAZyme
Location: 99342 - 100451 (+)
Gene ID: k141_166428_87
Type: CAZyme
Location: 100448 - 101398 (+)
Type: CAZyme
Location: 100448 - 101398 (+)
Gene ID: k141_166428_88
Type: pfam
Location: 101425 - 102450 (+)
Type: pfam
Location: 101425 - 102450 (+)
Gene ID: k141_166428_89
Type: CAZyme
Location: 102447 - 103616 (+)
Type: CAZyme
Location: 102447 - 103616 (+)
Gene ID: k141_166428_90
Type: pfam
Location: 103613 - 105097 (+)
Type: pfam
Location: 103613 - 105097 (+)
Gene ID: k141_166428_91
Type: CAZyme
Location: 105087 - 106091 (+)
Type: CAZyme
Location: 105087 - 106091 (+)
Gene ID: k141_166428_92
Type: TC
Location: 106137 - 107573 (+)
Type: TC
Location: 106137 - 107573 (+)
Gene ID: k141_166428_93
Type: pfam
Location: 107577 - 108059 (+)
Type: pfam
Location: 107577 - 108059 (+)
Gene ID: k141_166428_94
Type: TC
Location: 108664 - 109605 (-)
Type: TC
Location: 108664 - 109605 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.