Cluster: CGMR051205_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR051205
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_83703 | k141_83703_86 | 89415 | 90182 | - | 3.A.1.103.1 |
| TC | k141_83703 | k141_83703_87 | 90195 | 91040 | - | 3.A.1.103.6 |
| CAZyme | k141_83703 | k141_83703_88 | 91202 | 92131 | + | GT81 |
| CAZyme | k141_83703 | k141_83703_89 | 92163 | 94004 | - | GT2 |
| pfam | k141_83703 | k141_83703_90 | 94037 | 95224 | - | LicD |
| CAZyme | k141_83703 | k141_83703_91 | 95324 | 97201 | - | GT2 |
| pfam | k141_83703 | k141_83703_92 | 97236 | 99284 | - | DUF6541 |
| CAZyme | k141_83703 | k141_83703_93 | 99639 | 100313 | - | GT2 |
Gene ID: k141_83703_86
Type: TC
Location: 89415 - 90182 (-)
Type: TC
Location: 89415 - 90182 (-)
Gene ID: k141_83703_87
Type: TC
Location: 90195 - 91040 (-)
Type: TC
Location: 90195 - 91040 (-)
Gene ID: k141_83703_88
Type: CAZyme
Location: 91202 - 92131 (+)
Type: CAZyme
Location: 91202 - 92131 (+)
Gene ID: k141_83703_89
Type: CAZyme
Location: 92163 - 94004 (-)
Type: CAZyme
Location: 92163 - 94004 (-)
Gene ID: k141_83703_90
Type: pfam
Location: 94037 - 95224 (-)
Type: pfam
Location: 94037 - 95224 (-)
Gene ID: k141_83703_91
Type: CAZyme
Location: 95324 - 97201 (-)
Type: CAZyme
Location: 95324 - 97201 (-)
Gene ID: k141_83703_92
Type: pfam
Location: 97236 - 99284 (-)
Type: pfam
Location: 97236 - 99284 (-)
Gene ID: k141_83703_93
Type: CAZyme
Location: 99639 - 100313 (-)
Type: CAZyme
Location: 99639 - 100313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_83703_87 | vegan > omnivore | 1.57483 | 0.01057 |
| k141_83703_88 | vegan > omnivore | 5.30603 | 0.01057 |
| k141_83703_88 | vegetarian > omnivore | 2.41215 | 0.02921 |
| k141_83703_89 | vegan > omnivore | 17.55651 | 0.01057 |
| k141_83703_89 | vegetarian > omnivore | 12.76907 | 0.02921 |
| k141_83703_91 | vegan > omnivore | 9.66555 | 0.01057 |