Cluster: CGMR050919_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050919
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_21592 | k141_21592_107 | 106381 | 107307 | - | CE7 |
| TC | k141_21592 | k141_21592_108 | 107439 | 108266 | - | 3.A.1.5.27 |
| TC | k141_21592 | k141_21592_109 | 108267 | 110282 | - | 3.A.1.5.25 |
| TC | k141_21592 | k141_21592_110 | 110286 | 111242 | - | 3.A.1.5.38 |
| TC | k141_21592 | k141_21592_111 | 111398 | 113011 | - | 3.A.1.5.27 |
| pfam | k141_21592 | k141_21592_112 | 113375 | 115315 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | k141_21592 | k141_21592_113 | 115322 | 117004 | - | 2.A.66.4.4 |
Gene ID: k141_21592_107
Type: CAZyme
Location: 106381 - 107307 (-)
Type: CAZyme
Location: 106381 - 107307 (-)
Gene ID: k141_21592_108
Type: TC
Location: 107439 - 108266 (-)
Type: TC
Location: 107439 - 108266 (-)
Gene ID: k141_21592_109
Type: TC
Location: 108267 - 110282 (-)
Type: TC
Location: 108267 - 110282 (-)
Gene ID: k141_21592_110
Type: TC
Location: 110286 - 111242 (-)
Type: TC
Location: 110286 - 111242 (-)
Gene ID: k141_21592_111
Type: TC
Location: 111398 - 113011 (-)
Type: TC
Location: 111398 - 113011 (-)
Gene ID: k141_21592_112
Type: pfam
Location: 113375 - 115315 (-)
Type: pfam
Location: 113375 - 115315 (-)
Gene ID: k141_21592_113
Type: TC
Location: 115322 - 117004 (-)
Type: TC
Location: 115322 - 117004 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.