Cluster: CGMR050919_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050919
- CGC Family ID: CGCFAM_00289
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_72215 | k141_72215_6 | 4101 | 5507 | + | CE4 |
| STP | k141_72215 | k141_72215_7 | 5836 | 7680 | + | CBS | CBS |
| TC | k141_72215 | k141_72215_8 | 7689 | 8951 | + | 2.A.55.3.6 |
| TC | k141_72215 | k141_72215_9 | 9469 | 11685 | - | 9.B.97.5.1 |
| NULL(UNKNOWN) | k141_72215 | k141_72215_10 | 11692 | 11808 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_72215 | k141_72215_11 | 14415 | 14732 | + | 2.A.7.1.4 |
Gene ID: k141_72215_6
Type: CAZyme
Location: 4101 - 5507 (+)
Type: CAZyme
Location: 4101 - 5507 (+)
Gene ID: k141_72215_7
Type: STP
Location: 5836 - 7680 (+)
Type: STP
Location: 5836 - 7680 (+)
Gene ID: k141_72215_8
Type: TC
Location: 7689 - 8951 (+)
Type: TC
Location: 7689 - 8951 (+)
Gene ID: k141_72215_9
Type: TC
Location: 9469 - 11685 (-)
Type: TC
Location: 9469 - 11685 (-)
Gene ID: k141_72215_10
Type:
Location: 11692 - 11808 (-)
Type:
Location: 11692 - 11808 (-)
Gene ID: k141_72215_11
Type: TC
Location: 14415 - 14732 (+)
Type: TC
Location: 14415 - 14732 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_72215_11 | vegetarian > omnivore | 1.60749 | 0.00363 |
| k141_72215_11 | vegetarian > vegan | 1.18204 | 0.02677 |