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Cluster: CGMR050403_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_30365 k141_30365_65 58704 60548 - 3.A.1.106.2
TF k141_30365 k141_30365_66 60625 61515 - HTH_AraC | HTH_AraC
pfam k141_30365 k141_30365_67 61619 61963 + CMD
CAZyme k141_30365 k141_30365_68 62034 63089 - GT9
pfam k141_30365 k141_30365_69 63167 63892 + RIO1 | APH | Kdo
TC k141_30365 k141_30365_70 63937 65766 - 2.A.37.1.10
Gene ID: k141_30365_65
Type: TC
Location: 58704 - 60548 (-)
Gene ID: k141_30365_66
Type: TF
Location: 60625 - 61515 (-)
Gene ID: k141_30365_67
Type: pfam
Location: 61619 - 61963 (+)
Gene ID: k141_30365_68
Type: CAZyme
Location: 62034 - 63089 (-)
Gene ID: k141_30365_69
Type: pfam
Location: 63167 - 63892 (+)
Gene ID: k141_30365_70
Type: TC
Location: 63937 - 65766 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_30365_65 vegetarian > omnivore 1.30050 0.00500
k141_30365_65 vegetarian > vegan 2.06988 0.01402
k141_30365_66 vegetarian > vegan 1.05186 0.01357
k141_30365_67 vegan > omnivore 1.25175 0.00732
k141_30365_67 vegetarian > omnivore 1.26148 0.00500
k141_30365_68 vegetarian > omnivore 1.00846 0.00500
k141_30365_68 vegetarian > vegan 1.19201 0.01357

🧭 Explore Read Mapping of CGC

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