Cluster: CGMR050403_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050403
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_44961 | k141_44961_26 | 23353 | 24435 | + | 9.B.146.1.6 |
| pfam | k141_44961 | k141_44961_27 | 24498 | 25811 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | k141_44961 | k141_44961_28 | 25827 | 27011 | + | 2.A.103.1.1 |
| CAZyme | k141_44961 | k141_44961_29 | 27020 | 28072 | + | GT28 |
Gene ID: k141_44961_26
Type: TC
Location: 23353 - 24435 (+)
Type: TC
Location: 23353 - 24435 (+)
Gene ID: k141_44961_27
Type: pfam
Location: 24498 - 25811 (+)
Type: pfam
Location: 24498 - 25811 (+)
Gene ID: k141_44961_28
Type: TC
Location: 25827 - 27011 (+)
Type: TC
Location: 25827 - 27011 (+)
Gene ID: k141_44961_29
Type: CAZyme
Location: 27020 - 28072 (+)
Type: CAZyme
Location: 27020 - 28072 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900764435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_44961_26 | vegan > omnivore | 1.55966 | 0.00732 |
| k141_44961_26 | vegetarian > omnivore | 1.83659 | 0.00500 |