Cluster: CGMR050403_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050403
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_15713 | k141_15713_21 | 19197 | 21047 | + | 3.A.18.1.1 |
| CAZyme | k141_15713 | k141_15713_22 | 21143 | 22537 | + | GH23 |
| NULL(UNKNOWN) | k141_15713 | k141_15713_23 | 22594 | 22737 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_15713 | k141_15713_24 | 22793 | 23791 | - | TbpB_B_D |
| TC | k141_15713 | k141_15713_25 | 23942 | 26236 | + | 1.B.14.2.1 |
| pfam | k141_15713 | k141_15713_26 | 26301 | 26624 | - | Ribosomal_S30AE |
| TC | k141_15713 | k141_15713_27 | 26866 | 28236 | - | 2.A.25.1.4 |
Gene ID: k141_15713_21
Type: TC
Location: 19197 - 21047 (+)
Type: TC
Location: 19197 - 21047 (+)
Gene ID: k141_15713_22
Type: CAZyme
Location: 21143 - 22537 (+)
Type: CAZyme
Location: 21143 - 22537 (+)
Gene ID: k141_15713_23
Type:
Location: 22594 - 22737 (+)
Type:
Location: 22594 - 22737 (+)
Gene ID: k141_15713_24
Type: pfam
Location: 22793 - 23791 (-)
Type: pfam
Location: 22793 - 23791 (-)
Gene ID: k141_15713_25
Type: TC
Location: 23942 - 26236 (+)
Type: TC
Location: 23942 - 26236 (+)
Gene ID: k141_15713_26
Type: pfam
Location: 26301 - 26624 (-)
Type: pfam
Location: 26301 - 26624 (-)
Gene ID: k141_15713_27
Type: TC
Location: 26866 - 28236 (-)
Type: TC
Location: 26866 - 28236 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900764435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_15713_22 | vegetarian > omnivore | 1.47134 | 0.00500 |
| k141_15713_23 | vegetarian > omnivore | 2.14777 | 0.00500 |