Cluster: CGMR050403_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050403
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_47382 | k141_47382_44 | 42988 | 44115 | + | GH102 |
| pfam | k141_47382 | k141_47382_45 | 44115 | 44876 | + | ThiF |
| TC | k141_47382 | k141_47382_46 | 45044 | 46036 | + | 3.A.1.15.5 |
| pfam | k141_47382 | k141_47382_47 | 46328 | 48463 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | k141_47382 | k141_47382_48 | 48499 | 50403 | - | 2.A.37.1.2 |
Gene ID: k141_47382_44
Type: CAZyme
Location: 42988 - 44115 (+)
Type: CAZyme
Location: 42988 - 44115 (+)
Gene ID: k141_47382_45
Type: pfam
Location: 44115 - 44876 (+)
Type: pfam
Location: 44115 - 44876 (+)
Gene ID: k141_47382_46
Type: TC
Location: 45044 - 46036 (+)
Type: TC
Location: 45044 - 46036 (+)
Gene ID: k141_47382_47
Type: pfam
Location: 46328 - 48463 (+)
Type: pfam
Location: 46328 - 48463 (+)
Gene ID: k141_47382_48
Type: TC
Location: 48499 - 50403 (-)
Type: TC
Location: 48499 - 50403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900764435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_47382_45 | vegan > omnivore | 1.46988 | 0.00732 |
| k141_47382_45 | vegetarian > omnivore | 1.19115 | 0.00500 |
| k141_47382_47 | vegan > omnivore | 1.21438 | 0.00732 |
| k141_47382_47 | vegetarian > omnivore | 1.13517 | 0.00500 |
| k141_47382_48 | vegetarian > vegan | 1.06308 | 0.01357 |