Cluster: CGMR050403_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050403
- CGC Family ID: CGCFAM_05003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_3210 | k141_3210_8 | 10235 | 10492 | + | 8.A.8.1.1 |
| TC | k141_3210 | k141_3210_9 | 10572 | 12299 | + | 8.A.7.1.1 |
| TC | k141_3210 | k141_3210_10 | 12359 | 12859 | + | 4.A.1.1.1 |
| pfam | k141_3210 | k141_3210_11 | 12933 | 14132 | + | PMI_typeI_cat |
| CAZyme | k141_3210 | k141_3210_12 | 14254 | 17280 | + | GH2 |
Gene ID: k141_3210_8
Type: TC
Location: 10235 - 10492 (+)
Type: TC
Location: 10235 - 10492 (+)
Gene ID: k141_3210_9
Type: TC
Location: 10572 - 12299 (+)
Type: TC
Location: 10572 - 12299 (+)
Gene ID: k141_3210_10
Type: TC
Location: 12359 - 12859 (+)
Type: TC
Location: 12359 - 12859 (+)
Gene ID: k141_3210_11
Type: pfam
Location: 12933 - 14132 (+)
Type: pfam
Location: 12933 - 14132 (+)
Gene ID: k141_3210_12
Type: CAZyme
Location: 14254 - 17280 (+)
Type: CAZyme
Location: 14254 - 17280 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900764435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_3210_9 | vegan > omnivore | 1.78749 | 0.00732 |
| k141_3210_10 | vegan > omnivore | 4.16544 | 0.00732 |
| k141_3210_10 | vegetarian > omnivore | 1.32746 | 0.00500 |
| k141_3210_12 | vegan > omnivore | 1.08736 | 0.00732 |