Cluster: CGMR048616_CGC61
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR048616
- CGC Family ID: CGCFAM_00788
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_39444 | k141_39444_43 | 53171 | 54994 | - | CBM73 | GH19 |
| CAZyme | k141_39444 | k141_39444_44 | 55128 | 55568 | - | GH23 |
| CAZyme | k141_39444 | k141_39444_45 | 55672 | 58386 | - | GH18 |
| TC | k141_39444 | k141_39444_46 | 58640 | 59437 | - | 3.A.15.2.1 |
| pfam | k141_39444 | k141_39444_47 | 59434 | 59919 | - | T2SSM |
| pfam | k141_39444 | k141_39444_48 | 59916 | 61049 | - | T2SSL | GspL_C |
| TC | k141_39444 | k141_39444_49 | 61065 | 62075 | - | 3.A.15.1.1 |
| pfam | k141_39444 | k141_39444_50 | 62072 | 62572 | - | T2SSJ |
| TC | k141_39444 | k141_39444_51 | 62630 | 63010 | - | 3.A.15.1.1 |
| TC | k141_39444 | k141_39444_52 | 63003 | 63488 | - | 3.A.15.1.1 |
| TC | k141_39444 | k141_39444_53 | 63488 | 63937 | - | 3.A.15.1.1 |
| TC | k141_39444 | k141_39444_54 | 63941 | 65149 | - | 3.A.15.1.1 |
| TC | k141_39444 | k141_39444_55 | 65149 | 66627 | - | 3.A.15.1.1 |
| TC | k141_39444 | k141_39444_56 | 66642 | 68573 | - | 1.B.22.1.1 |
Gene ID: k141_39444_43
Type: CAZyme
Location: 53171 - 54994 (-)
Type: CAZyme
Location: 53171 - 54994 (-)
Gene ID: k141_39444_44
Type: CAZyme
Location: 55128 - 55568 (-)
Type: CAZyme
Location: 55128 - 55568 (-)
Gene ID: k141_39444_45
Type: CAZyme
Location: 55672 - 58386 (-)
Type: CAZyme
Location: 55672 - 58386 (-)
Gene ID: k141_39444_46
Type: TC
Location: 58640 - 59437 (-)
Type: TC
Location: 58640 - 59437 (-)
Gene ID: k141_39444_47
Type: pfam
Location: 59434 - 59919 (-)
Type: pfam
Location: 59434 - 59919 (-)
Gene ID: k141_39444_48
Type: pfam
Location: 59916 - 61049 (-)
Type: pfam
Location: 59916 - 61049 (-)
Gene ID: k141_39444_49
Type: TC
Location: 61065 - 62075 (-)
Type: TC
Location: 61065 - 62075 (-)
Gene ID: k141_39444_50
Type: pfam
Location: 62072 - 62572 (-)
Type: pfam
Location: 62072 - 62572 (-)
Gene ID: k141_39444_51
Type: TC
Location: 62630 - 63010 (-)
Type: TC
Location: 62630 - 63010 (-)
Gene ID: k141_39444_52
Type: TC
Location: 63003 - 63488 (-)
Type: TC
Location: 63003 - 63488 (-)
Gene ID: k141_39444_53
Type: TC
Location: 63488 - 63937 (-)
Type: TC
Location: 63488 - 63937 (-)
Gene ID: k141_39444_54
Type: TC
Location: 63941 - 65149 (-)
Type: TC
Location: 63941 - 65149 (-)
Gene ID: k141_39444_55
Type: TC
Location: 65149 - 66627 (-)
Type: TC
Location: 65149 - 66627 (-)
Gene ID: k141_39444_56
Type: TC
Location: 66642 - 68573 (-)
Type: TC
Location: 66642 - 68573 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter kobei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_39444_43 | vegetarian > omnivore | 1.22411 | 0.03330 |
| k141_39444_44 | vegetarian > omnivore | 1.68782 | 0.03330 |
| k141_39444_44 | vegetarian > vegan | 1.33485 | 0.04949 |
| k141_39444_45 | vegetarian > omnivore | 1.56816 | 0.03330 |
| k141_39444_46 | vegetarian > omnivore | 1.38442 | 0.03330 |
| k141_39444_46 | vegetarian > vegan | 3.03686 | 0.03557 |
| k141_39444_47 | vegetarian > vegan | 2.86422 | 0.04949 |
| k141_39444_48 | vegetarian > omnivore | 1.59020 | 0.03330 |
| k141_39444_49 | vegetarian > omnivore | 2.76722 | 0.03330 |
| k141_39444_49 | vegetarian > vegan | 1.49353 | 0.04949 |
| k141_39444_51 | vegetarian > omnivore | 1.89711 | 0.03330 |
| k141_39444_51 | vegetarian > vegan | 1.08584 | 0.04949 |
| k141_39444_52 | vegetarian > omnivore | 2.97944 | 0.03330 |
| k141_39444_52 | vegetarian > vegan | 1.01645 | 0.04949 |
| k141_39444_53 | vegetarian > omnivore | 3.43492 | 0.03330 |
| k141_39444_54 | vegetarian > omnivore | 1.51515 | 0.03330 |