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Cluster: CGMR048616_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_43215 k141_43215_78 78227 78970 - 9.B.158.1.2
pfam k141_43215 k141_43215_79 79049 79609 - YecM
pfam k141_43215 k141_43215_80 79849 81582 + tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1
CAZyme k141_43215 k141_43215_81 81618 82760 - GH105
TC k141_43215 k141_43215_82 82762 84345 - 2.A.2.5.2
pfam k141_43215 k141_43215_83 84608 85000 - FlhE
TC k141_43215 k141_43215_84 85000 87078 - 3.A.6.2.1
TC k141_43215 k141_43215_85 87071 88219 - 3.A.6.2.1
pfam k141_43215 k141_43215_86 88722 89297 + Fimbrial
pfam k141_43215 k141_43215_87 89422 90114 + PapD_N | PapD_C
TC k141_43215 k141_43215_88 90144 92678 + 1.B.11.3.6
Gene ID: k141_43215_78
Type: TC
Location: 78227 - 78970 (-)
Gene ID: k141_43215_79
Type: pfam
Location: 79049 - 79609 (-)
Gene ID: k141_43215_80
Type: pfam
Location: 79849 - 81582 (+)
Gene ID: k141_43215_81
Type: CAZyme
Location: 81618 - 82760 (-)
Gene ID: k141_43215_82
Type: TC
Location: 82762 - 84345 (-)
Gene ID: k141_43215_83
Type: pfam
Location: 84608 - 85000 (-)
Gene ID: k141_43215_84
Type: TC
Location: 85000 - 87078 (-)
Gene ID: k141_43215_85
Type: TC
Location: 87071 - 88219 (-)
Gene ID: k141_43215_86
Type: pfam
Location: 88722 - 89297 (+)
Gene ID: k141_43215_87
Type: pfam
Location: 89422 - 90114 (+)
Gene ID: k141_43215_88
Type: TC
Location: 90144 - 92678 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_43215_81 vegetarian > omnivore 1.32898 0.03330
k141_43215_81 vegetarian > vegan 1.01746 0.04949
k141_43215_82 vegetarian > omnivore 1.60556 0.02563
k141_43215_82 vegetarian > vegan 1.35405 0.04949

🧭 Explore Read Mapping of CGC

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