Cluster: CGMR047957_CGC18
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR047957
- CGC Family ID: CGCFAM_00585
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_288946 | k141_288946_13 | 13756 | 15138 | - | GH1 |
| TF | k141_288946 | k141_288946_14 | 15272 | 16555 | - | HTH_AraC |
| TC | k141_288946 | k141_288946_15 | 16565 | 18199 | - | 8.A.59.2.1 |
| TC | k141_288946 | k141_288946_16 | 18196 | 18810 | - | 9.B.28.1.12 |
| STP | k141_288946 | k141_288946_17 | 18963 | 20423 | - | SBP_bac_1 |
| TC | k141_288946 | k141_288946_18 | 20535 | 21470 | - | 3.A.1.1.29 |
| TC | k141_288946 | k141_288946_19 | 21484 | 22419 | - | 3.A.1.1.10 |
| CAZyme | k141_288946 | k141_288946_20 | 22587 | 24470 | - | GH20 |
| pfam | k141_288946 | k141_288946_21 | 24455 | 25333 | - | ROK |
| CAZyme | k141_288946 | k141_288946_22 | 25401 | 28034 | - | GH38 |
| CAZyme | k141_288946 | k141_288946_23 | 28036 | 29325 | - | GH125 |
| CAZyme | k141_288946 | k141_288946_24 | 29495 | 31588 | + | GH92 |
| CAZyme | k141_288946 | k141_288946_25 | 31627 | 33333 | - | GH29 |
| TC | k141_288946 | k141_288946_26 | 33498 | 34187 | - | 2.A.89.3.2 |
| STP | k141_288946 | k141_288946_27 | 34356 | 34979 | - | TetR_N |
| TC | k141_288946 | k141_288946_28 | 35019 | 35528 | - | 3.A.1.105.6 |
Gene ID: k141_288946_13
Type: CAZyme
Location: 13756 - 15138 (-)
Type: CAZyme
Location: 13756 - 15138 (-)
Gene ID: k141_288946_14
Type: TF
Location: 15272 - 16555 (-)
Type: TF
Location: 15272 - 16555 (-)
Gene ID: k141_288946_15
Type: TC
Location: 16565 - 18199 (-)
Type: TC
Location: 16565 - 18199 (-)
Gene ID: k141_288946_16
Type: TC
Location: 18196 - 18810 (-)
Type: TC
Location: 18196 - 18810 (-)
Gene ID: k141_288946_17
Type: STP
Location: 18963 - 20423 (-)
Type: STP
Location: 18963 - 20423 (-)
Gene ID: k141_288946_18
Type: TC
Location: 20535 - 21470 (-)
Type: TC
Location: 20535 - 21470 (-)
Gene ID: k141_288946_19
Type: TC
Location: 21484 - 22419 (-)
Type: TC
Location: 21484 - 22419 (-)
Gene ID: k141_288946_20
Type: CAZyme
Location: 22587 - 24470 (-)
Type: CAZyme
Location: 22587 - 24470 (-)
Gene ID: k141_288946_21
Type: pfam
Location: 24455 - 25333 (-)
Type: pfam
Location: 24455 - 25333 (-)
Gene ID: k141_288946_22
Type: CAZyme
Location: 25401 - 28034 (-)
Type: CAZyme
Location: 25401 - 28034 (-)
Gene ID: k141_288946_23
Type: CAZyme
Location: 28036 - 29325 (-)
Type: CAZyme
Location: 28036 - 29325 (-)
Gene ID: k141_288946_24
Type: CAZyme
Location: 29495 - 31588 (+)
Type: CAZyme
Location: 29495 - 31588 (+)
Gene ID: k141_288946_25
Type: CAZyme
Location: 31627 - 33333 (-)
Type: CAZyme
Location: 31627 - 33333 (-)
Gene ID: k141_288946_26
Type: TC
Location: 33498 - 34187 (-)
Type: TC
Location: 33498 - 34187 (-)
Gene ID: k141_288946_27
Type: STP
Location: 34356 - 34979 (-)
Type: STP
Location: 34356 - 34979 (-)
Gene ID: k141_288946_28
Type: TC
Location: 35019 - 35528 (-)
Type: TC
Location: 35019 - 35528 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus gordonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.