Cluster: CGMR047672_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR047672
- CGC Family ID: CGCFAM_01390
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_52330 | k141_52330_18 | 20846 | 21898 | - | GT9 |
| pfam | k141_52330 | k141_52330_19 | 22005 | 22745 | + | RIO1 | Kdo |
| TC | k141_52330 | k141_52330_20 | 22770 | 23318 | + | 2.A.37.1.2 |
| CAZyme | k141_52330 | k141_52330_21 | 23311 | 24588 | - | GT30 |
| CAZyme | k141_52330 | k141_52330_22 | 24591 | 25646 | - | GT9 |
| pfam | k141_52330 | k141_52330_23 | 25713 | 26675 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | GDP_Man_Dehyd |
| TC | k141_52330 | k141_52330_24 | 26657 | 27520 | + | 9.B.104.1.1 |
Gene ID: k141_52330_18
Type: CAZyme
Location: 20846 - 21898 (-)
Type: CAZyme
Location: 20846 - 21898 (-)
Gene ID: k141_52330_19
Type: pfam
Location: 22005 - 22745 (+)
Type: pfam
Location: 22005 - 22745 (+)
Gene ID: k141_52330_20
Type: TC
Location: 22770 - 23318 (+)
Type: TC
Location: 22770 - 23318 (+)
Gene ID: k141_52330_21
Type: CAZyme
Location: 23311 - 24588 (-)
Type: CAZyme
Location: 23311 - 24588 (-)
Gene ID: k141_52330_22
Type: CAZyme
Location: 24591 - 25646 (-)
Type: CAZyme
Location: 24591 - 25646 (-)
Gene ID: k141_52330_23
Type: pfam
Location: 25713 - 26675 (+)
Type: pfam
Location: 25713 - 26675 (+)
Gene ID: k141_52330_24
Type: TC
Location: 26657 - 27520 (+)
Type: TC
Location: 26657 - 27520 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp003456415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.