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Cluster: CGMR046257_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_4475 k141_4475_31 34264 36561 + GH3
TC k141_4475 k141_4475_32 36708 37625 + 3.A.1.12.15
TC k141_4475 k141_4475_33 37638 38795 + 3.A.1.12.15
TC k141_4475 k141_4475_34 38788 39738 + 3.A.1.12.15
TC k141_4475 k141_4475_35 39722 40459 + 3.A.1.12.15
NULL(UNKNOWN) k141_4475 k141_4475_36 40434 40547 - NULL(UNKNOWN)
[View Structural Homologs]
TF k141_4475 k141_4475_37 40617 41357 - MerR
TC k141_4475 k141_4475_38 41575 43260 + 9.B.33.1.1
TF k141_4475 k141_4475_39 43254 43973 + LytTR
pfam k141_4475 k141_4475_40 44021 44491 + DUF1456 | DUF1456
TC k141_4475 k141_4475_41 44690 46285 - 3.A.1.121.4
peptidase k141_4475 k141_4475_42 46508 47428 + C82.UPB
TF k141_4475 k141_4475_43 47472 48188 - GntR
TC k141_4475 k141_4475_44 48204 49526 - 4.A.3.2.9
CAZyme k141_4475 k141_4475_45 49578 50954 - GH1
TC k141_4475 k141_4475_46 51117 52154 - 8.A.5.1.6
TC k141_4475 k141_4475_47 52257 53780 - 1.B.17.3.8
TC k141_4475 k141_4475_48 53780 55351 - 2.A.1.3.2
TC k141_4475 k141_4475_49 55348 56442 - 8.A.1.1.2
TC k141_4475 k141_4475_50 56544 57653 - 2.A.45.2.5
Gene ID: k141_4475_31
Type: CAZyme
Location: 34264 - 36561 (+)
Gene ID: k141_4475_32
Type: TC
Location: 36708 - 37625 (+)
Gene ID: k141_4475_33
Type: TC
Location: 37638 - 38795 (+)
Gene ID: k141_4475_34
Type: TC
Location: 38788 - 39738 (+)
Gene ID: k141_4475_35
Type: TC
Location: 39722 - 40459 (+)
Gene ID: k141_4475_36
Type:
Location: 40434 - 40547 (-)
Gene ID: k141_4475_37
Type: TF
Location: 40617 - 41357 (-)
Gene ID: k141_4475_38
Type: TC
Location: 41575 - 43260 (+)
Gene ID: k141_4475_39
Type: TF
Location: 43254 - 43973 (+)
Gene ID: k141_4475_40
Type: pfam
Location: 44021 - 44491 (+)
Gene ID: k141_4475_41
Type: TC
Location: 44690 - 46285 (-)
Gene ID: k141_4475_42
Type: peptidase
Location: 46508 - 47428 (+)
Gene ID: k141_4475_43
Type: TF
Location: 47472 - 48188 (-)
Gene ID: k141_4475_44
Type: TC
Location: 48204 - 49526 (-)
Gene ID: k141_4475_45
Type: CAZyme
Location: 49578 - 50954 (-)
Gene ID: k141_4475_46
Type: TC
Location: 51117 - 52154 (-)
Gene ID: k141_4475_47
Type: TC
Location: 52257 - 53780 (-)
Gene ID: k141_4475_48
Type: TC
Location: 53780 - 55351 (-)
Gene ID: k141_4475_49
Type: TC
Location: 55348 - 56442 (-)
Gene ID: k141_4475_50
Type: TC
Location: 56544 - 57653 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_4475_33 vegetarian > vegan 1.49511 0.04707
k141_4475_35 vegetarian > vegan 1.67665 0.04707
k141_4475_36 vegetarian > vegan 1.94789 0.04707
k141_4475_40 vegetarian > omnivore 1.39941 0.04670
k141_4475_50 vegetarian > vegan 1.18316 0.04707

🧭 Explore Read Mapping of CGC

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