Cluster: CGMR045347_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR045347
- CGC Family ID: CGCFAM_00182
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_75772 | k141_75772_6 | 5394 | 6611 | - | GT4 |
| pfam | k141_75772 | k141_75772_7 | 6626 | 7390 | - | BcrAD_BadFG |
| pfam | k141_75772 | k141_75772_8 | 7538 | 8701 | - | HGD-D |
| TC | k141_75772 | k141_75772_9 | 8778 | 9563 | - | 3.A.1.5.36 |
| TC | k141_75772 | k141_75772_10 | 9553 | 10548 | - | 3.A.1.5.35 |
| TC | k141_75772 | k141_75772_11 | 10552 | 10767 | - | 3.A.1.5.39 |
Gene ID: k141_75772_6
Type: CAZyme
Location: 5394 - 6611 (-)
Type: CAZyme
Location: 5394 - 6611 (-)
Gene ID: k141_75772_7
Type: pfam
Location: 6626 - 7390 (-)
Type: pfam
Location: 6626 - 7390 (-)
Gene ID: k141_75772_8
Type: pfam
Location: 7538 - 8701 (-)
Type: pfam
Location: 7538 - 8701 (-)
Gene ID: k141_75772_9
Type: TC
Location: 8778 - 9563 (-)
Type: TC
Location: 8778 - 9563 (-)
Gene ID: k141_75772_10
Type: TC
Location: 9553 - 10548 (-)
Type: TC
Location: 9553 - 10548 (-)
Gene ID: k141_75772_11
Type: TC
Location: 10552 - 10767 (-)
Type: TC
Location: 10552 - 10767 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_75772_6 | vegan > omnivore | 1.87407 | 0.00694 |
| k141_75772_9 | vegan > omnivore | 3.23672 | 0.00820 |
| k141_75772_10 | vegan > omnivore | 1.61446 | 0.00820 |
| k141_75772_11 | vegan > omnivore | 3.00103 | 0.00820 |