Cluster: CGMR045332_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR045332
- CGC Family ID: CGCFAM_01408
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_179521 | k141_179521_3 | 708 | 1613 | + | 2.A.7.3.58 |
| CAZyme | k141_179521 | k141_179521_4 | 1610 | 2563 | + | GT9 |
| TC | k141_179521 | k141_179521_5 | 2729 | 3850 | + | 1.B.1.3.3 |
Gene ID: k141_179521_3
Type: TC
Location: 708 - 1613 (+)
Type: TC
Location: 708 - 1613 (+)
Gene ID: k141_179521_4
Type: CAZyme
Location: 1610 - 2563 (+)
Type: CAZyme
Location: 1610 - 2563 (+)
Gene ID: k141_179521_5
Type: TC
Location: 2729 - 3850 (+)
Type: TC
Location: 2729 - 3850 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp902482195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_179521_4 | vegan > omnivore | 1.22496 | 0.02030 |
| k141_179521_4 | vegetarian > omnivore | 1.75258 | 0.02445 |