Cluster: CGMR045248_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR045248
- CGC Family ID: CGCFAM_01064
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_302499 | k141_302499_16 | 17073 | 17984 | - | 2.A.7.3.12 |
| CAZyme | k141_302499 | k141_302499_17 | 18062 | 20542 | - | GT51 |
| pfam | k141_302499 | k141_302499_18 | 20683 | 21939 | + | tRNA-synt_1b | S4 | SYY_C-terminal |
| pfam | k141_302499 | k141_302499_19 | 21994 | 22842 | + | MTS | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA |
| CAZyme | k141_302499 | k141_302499_20 | 23409 | 25667 | - | GT35 |
| CAZyme | k141_302499 | k141_302499_21 | 25692 | 27209 | - | GH77 |
| TC | k141_302499 | k141_302499_22 | 27685 | 28953 | + | 3.A.1.1.26 |
| TC | k141_302499 | k141_302499_23 | 29078 | 30370 | + | 3.A.1.1.26 |
| TC | k141_302499 | k141_302499_24 | 30372 | 31214 | + | 3.A.1.1.26 |
| NULL(UNKNOWN) | k141_302499 | k141_302499_25 | 31469 | 32275 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_302499 | k141_302499_26 | 32285 | 33271 | + | LacI |
| TC | k141_302499 | k141_302499_27 | 33305 | 34246 | - | 2.A.115.1.1 |
Gene ID: k141_302499_16
Type: TC
Location: 17073 - 17984 (-)
Type: TC
Location: 17073 - 17984 (-)
Gene ID: k141_302499_17
Type: CAZyme
Location: 18062 - 20542 (-)
Type: CAZyme
Location: 18062 - 20542 (-)
Gene ID: k141_302499_18
Type: pfam
Location: 20683 - 21939 (+)
Type: pfam
Location: 20683 - 21939 (+)
Gene ID: k141_302499_19
Type: pfam
Location: 21994 - 22842 (+)
Type: pfam
Location: 21994 - 22842 (+)
Gene ID: k141_302499_20
Type: CAZyme
Location: 23409 - 25667 (-)
Type: CAZyme
Location: 23409 - 25667 (-)
Gene ID: k141_302499_21
Type: CAZyme
Location: 25692 - 27209 (-)
Type: CAZyme
Location: 25692 - 27209 (-)
Gene ID: k141_302499_22
Type: TC
Location: 27685 - 28953 (+)
Type: TC
Location: 27685 - 28953 (+)
Gene ID: k141_302499_23
Type: TC
Location: 29078 - 30370 (+)
Type: TC
Location: 29078 - 30370 (+)
Gene ID: k141_302499_24
Type: TC
Location: 30372 - 31214 (+)
Type: TC
Location: 30372 - 31214 (+)
Gene ID: k141_302499_25
Type:
Location: 31469 - 32275 (+)
Type:
Location: 31469 - 32275 (+)
Gene ID: k141_302499_26
Type: TF
Location: 32285 - 33271 (+)
Type: TF
Location: 32285 - 33271 (+)
Gene ID: k141_302499_27
Type: TC
Location: 33305 - 34246 (-)
Type: TC
Location: 33305 - 34246 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_302499_20 | vegan > omnivore | 1.15687 | 0.03027 |
| k141_302499_20 | vegetarian > omnivore | 1.26069 | 0.04977 |