Cluster: CGMR043371_CGC23
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR043371
- CGC Family ID: CGCFAM_05354
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_27291 | k141_27291_9 | 5251 | 8226 | + | GH2 |
| pfam | k141_27291 | k141_27291_10 | 8340 | 8675 | + | RUBY_RBDX |
| TC | k141_27291 | k141_27291_11 | 8958 | 11393 | + | 2.A.16.2.2 |
| pfam | k141_27291 | k141_27291_12 | 11493 | 11843 | - | Thioredoxin |
| pfam | k141_27291 | k141_27291_13 | 11896 | 13287 | - | DUF4317 |
| TC | k141_27291 | k141_27291_14 | 13496 | 14425 | - | 2.A.16.6.1 |
| pfam | k141_27291 | k141_27291_15 | 14437 | 14922 | - | C_GCAxxG_C_C |
| TC | k141_27291 | k141_27291_16 | 15079 | 15906 | - | 4.A.6.1.4 |
| TC | k141_27291 | k141_27291_17 | 15896 | 16708 | - | 4.A.6.1.4 |
| TC | k141_27291 | k141_27291_18 | 16736 | 17212 | - | 4.A.6.1.4 |
| TF | k141_27291 | k141_27291_19 | 17466 | 18635 | + | HTH_AraC | HTH_AraC |
| pfam | k141_27291 | k141_27291_20 | 18681 | 18959 | - | YajC |
| TC | k141_27291 | k141_27291_21 | 18961 | 19392 | - | 4.A.6.1.14 |
| STP | k141_27291 | k141_27291_22 | 19473 | 20651 | - | SIS | SIS |
| CAZyme | k141_27291 | k141_27291_23 | 20818 | 21957 | + | CE9 |
Gene ID: k141_27291_9
Type: CAZyme
Location: 5251 - 8226 (+)
Type: CAZyme
Location: 5251 - 8226 (+)
Gene ID: k141_27291_10
Type: pfam
Location: 8340 - 8675 (+)
Type: pfam
Location: 8340 - 8675 (+)
Gene ID: k141_27291_11
Type: TC
Location: 8958 - 11393 (+)
Type: TC
Location: 8958 - 11393 (+)
Gene ID: k141_27291_12
Type: pfam
Location: 11493 - 11843 (-)
Type: pfam
Location: 11493 - 11843 (-)
Gene ID: k141_27291_13
Type: pfam
Location: 11896 - 13287 (-)
Type: pfam
Location: 11896 - 13287 (-)
Gene ID: k141_27291_14
Type: TC
Location: 13496 - 14425 (-)
Type: TC
Location: 13496 - 14425 (-)
Gene ID: k141_27291_15
Type: pfam
Location: 14437 - 14922 (-)
Type: pfam
Location: 14437 - 14922 (-)
Gene ID: k141_27291_16
Type: TC
Location: 15079 - 15906 (-)
Type: TC
Location: 15079 - 15906 (-)
Gene ID: k141_27291_17
Type: TC
Location: 15896 - 16708 (-)
Type: TC
Location: 15896 - 16708 (-)
Gene ID: k141_27291_18
Type: TC
Location: 16736 - 17212 (-)
Type: TC
Location: 16736 - 17212 (-)
Gene ID: k141_27291_19
Type: TF
Location: 17466 - 18635 (+)
Type: TF
Location: 17466 - 18635 (+)
Gene ID: k141_27291_20
Type: pfam
Location: 18681 - 18959 (-)
Type: pfam
Location: 18681 - 18959 (-)
Gene ID: k141_27291_21
Type: TC
Location: 18961 - 19392 (-)
Type: TC
Location: 18961 - 19392 (-)
Gene ID: k141_27291_22
Type: STP
Location: 19473 - 20651 (-)
Type: STP
Location: 19473 - 20651 (-)
Gene ID: k141_27291_23
Type: CAZyme
Location: 20818 - 21957 (+)
Type: CAZyme
Location: 20818 - 21957 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.