Cluster: CGMR043123_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR043123
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_102660 | k141_102660_9 | 8473 | 9537 | - | 3.A.11.1.3 |
| CAZyme | k141_102660 | k141_102660_10 | 9720 | 12119 | + | GT51 |
| TF | k141_102660 | k141_102660_11 | 12077 | 13024 | - | HTH_1 |
| TC | k141_102660 | k141_102660_12 | 13181 | 14872 | + | 4.C.1.1.4 |
| TC | k141_102660 | k141_102660_13 | 14872 | 18159 | + | 3.B.1.1.2 |
| TC | k141_102660 | k141_102660_14 | 18178 | 19809 | - | 3.A.1.129.1 |
| TC | k141_102660 | k141_102660_15 | 19802 | 21502 | - | 3.A.1.129.1 |
| TC | k141_102660 | k141_102660_16 | 21517 | 22518 | - | 3.D.4.3.2 |
| TC | k141_102660 | k141_102660_17 | 22520 | 23917 | - | 3.D.4.3.2 |
| TC | k141_102660 | k141_102660_18 | 24034 | 24756 | - | 2.A.122.1.5 |
| TC | k141_102660 | k141_102660_19 | 24753 | 25112 | - | 1.E.14.1.13 |
| NULL(UNKNOWN) | k141_102660 | k141_102660_20 | 25292 | 25684 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_102660 | k141_102660_21 | 25776 | 26549 | + | 1.B.10.2.2 |
| NULL(UNKNOWN) | k141_102660 | k141_102660_22 | 26601 | 26780 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_102660 | k141_102660_23 | 27003 | 27881 | + | 2.A.7.3.1 |
Gene ID: k141_102660_9
Type: TC
Location: 8473 - 9537 (-)
Type: TC
Location: 8473 - 9537 (-)
Gene ID: k141_102660_10
Type: CAZyme
Location: 9720 - 12119 (+)
Type: CAZyme
Location: 9720 - 12119 (+)
Gene ID: k141_102660_11
Type: TF
Location: 12077 - 13024 (-)
Type: TF
Location: 12077 - 13024 (-)
Gene ID: k141_102660_12
Type: TC
Location: 13181 - 14872 (+)
Type: TC
Location: 13181 - 14872 (+)
Gene ID: k141_102660_13
Type: TC
Location: 14872 - 18159 (+)
Type: TC
Location: 14872 - 18159 (+)
Gene ID: k141_102660_14
Type: TC
Location: 18178 - 19809 (-)
Type: TC
Location: 18178 - 19809 (-)
Gene ID: k141_102660_15
Type: TC
Location: 19802 - 21502 (-)
Type: TC
Location: 19802 - 21502 (-)
Gene ID: k141_102660_16
Type: TC
Location: 21517 - 22518 (-)
Type: TC
Location: 21517 - 22518 (-)
Gene ID: k141_102660_17
Type: TC
Location: 22520 - 23917 (-)
Type: TC
Location: 22520 - 23917 (-)
Gene ID: k141_102660_18
Type: TC
Location: 24034 - 24756 (-)
Type: TC
Location: 24034 - 24756 (-)
Gene ID: k141_102660_19
Type: TC
Location: 24753 - 25112 (-)
Type: TC
Location: 24753 - 25112 (-)
Gene ID: k141_102660_20
Type:
Location: 25292 - 25684 (+)
Type:
Location: 25292 - 25684 (+)
Gene ID: k141_102660_21
Type: TC
Location: 25776 - 26549 (+)
Type: TC
Location: 25776 - 26549 (+)
Gene ID: k141_102660_22
Type:
Location: 26601 - 26780 (-)
Type:
Location: 26601 - 26780 (-)
Gene ID: k141_102660_23
Type: TC
Location: 27003 - 27881 (+)
Type: TC
Location: 27003 - 27881 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Halopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.