Cluster: CGMR043123_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR043123
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_186214 | k141_186214_30 | 24785 | 26581 | - | 3.A.15.4.1 |
| STP | k141_186214 | k141_186214_31 | 26642 | 28045 | - | CYTH |
| pfam | k141_186214 | k141_186214_32 | 28176 | 28853 | + | PhoU_div |
| TC | k141_186214 | k141_186214_33 | 28886 | 30139 | + | 2.A.20.2.4 |
| peptidase | k141_186214 | k141_186214_34 | 30200 | 31348 | + | M20.UPA |
| CAZyme | k141_186214 | k141_186214_35 | 31404 | 33503 | - | GT2 |
Gene ID: k141_186214_30
Type: TC
Location: 24785 - 26581 (-)
Type: TC
Location: 24785 - 26581 (-)
Gene ID: k141_186214_31
Type: STP
Location: 26642 - 28045 (-)
Type: STP
Location: 26642 - 28045 (-)
Gene ID: k141_186214_32
Type: pfam
Location: 28176 - 28853 (+)
Type: pfam
Location: 28176 - 28853 (+)
Gene ID: k141_186214_33
Type: TC
Location: 28886 - 30139 (+)
Type: TC
Location: 28886 - 30139 (+)
Gene ID: k141_186214_34
Type: peptidase
Location: 30200 - 31348 (+)
Type: peptidase
Location: 30200 - 31348 (+)
Gene ID: k141_186214_35
Type: CAZyme
Location: 31404 - 33503 (-)
Type: CAZyme
Location: 31404 - 33503 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Halopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.