Cluster: CGMR043123_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR043123
- CGC Family ID: CGCFAM_00359
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_117940 | k141_117940_36 | 43568 | 44923 | + | CBM50 | GH23 |
| TC | k141_117940 | k141_117940_37 | 45060 | 46856 | + | 3.A.1.5.21 |
| TC | k141_117940 | k141_117940_38 | 46874 | 48712 | + | 3.A.1.5.24 |
| TC | k141_117940 | k141_117940_39 | 48716 | 49789 | + | 3.A.1.5.21 |
| TC | k141_117940 | k141_117940_40 | 49794 | 50822 | + | 3.A.1.5.21 |
| TC | k141_117940 | k141_117940_41 | 50824 | 52446 | + | 3.A.1.5.21 |
Gene ID: k141_117940_36
Type: CAZyme
Location: 43568 - 44923 (+)
Type: CAZyme
Location: 43568 - 44923 (+)
Gene ID: k141_117940_37
Type: TC
Location: 45060 - 46856 (+)
Type: TC
Location: 45060 - 46856 (+)
Gene ID: k141_117940_38
Type: TC
Location: 46874 - 48712 (+)
Type: TC
Location: 46874 - 48712 (+)
Gene ID: k141_117940_39
Type: TC
Location: 48716 - 49789 (+)
Type: TC
Location: 48716 - 49789 (+)
Gene ID: k141_117940_40
Type: TC
Location: 49794 - 50822 (+)
Type: TC
Location: 49794 - 50822 (+)
Gene ID: k141_117940_41
Type: TC
Location: 50824 - 52446 (+)
Type: TC
Location: 50824 - 52446 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Halopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.