Cluster: CGMR041993_CGC7
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR041993
- CGC Family ID: CGCFAM_03610
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_19066 | k141_19066_378 | 437431 | 438294 | - | 3.A.1.1.48 |
| TC | k141_19066 | k141_19066_379 | 438291 | 439280 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | k141_19066 | k141_19066_380 | 439398 | 440789 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_19066 | k141_19066_381 | 440896 | 441903 | - | LacI |
| CAZyme | k141_19066 | k141_19066_382 | 442430 | 444877 | + | GH94 |
| CAZyme | k141_19066 | k141_19066_383 | 444977 | 446302 | + | GH1 |
| NULL(UNKNOWN) | k141_19066 | k141_19066_384 | 446221 | 446448 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_19066 | k141_19066_385 | 446657 | 447643 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_19066 | k141_19066_386 | 447819 | 448667 | + | 3.A.1.3.14 |
| NULL(UNKNOWN) | k141_19066 | k141_19066_387 | 449206 | 449496 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_19066 | k141_19066_388 | 450423 | 451379 | - | 3.A.11.1.4 |
| NULL(UNKNOWN) | k141_19066 | k141_19066_389 | 451529 | 451780 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_19066 | k141_19066_390 | 451870 | 452547 | - | 3.A.1.122.2 |
| pfam | k141_19066 | k141_19066_391 | 452778 | 454286 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | k141_19066 | k141_19066_392 | 454439 | 454918 | + | 9.A.11.1.1 |
| TC | k141_19066 | k141_19066_393 | 454932 | 455942 | + | 9.A.11.1.1 |
Gene ID: k141_19066_378
Type: TC
Location: 437431 - 438294 (-)
Type: TC
Location: 437431 - 438294 (-)
Gene ID: k141_19066_379
Type: TC
Location: 438291 - 439280 (-)
Type: TC
Location: 438291 - 439280 (-)
Gene ID: k141_19066_380
Type:
Location: 439398 - 440789 (-)
Type:
Location: 439398 - 440789 (-)
Gene ID: k141_19066_381
Type: TF
Location: 440896 - 441903 (-)
Type: TF
Location: 440896 - 441903 (-)
Gene ID: k141_19066_382
Type: CAZyme
Location: 442430 - 444877 (+)
Type: CAZyme
Location: 442430 - 444877 (+)
Gene ID: k141_19066_383
Type: CAZyme
Location: 444977 - 446302 (+)
Type: CAZyme
Location: 444977 - 446302 (+)
Gene ID: k141_19066_384
Type:
Location: 446221 - 446448 (-)
Type:
Location: 446221 - 446448 (-)
Gene ID: k141_19066_385
Type:
Location: 446657 - 447643 (+)
Type:
Location: 446657 - 447643 (+)
Gene ID: k141_19066_386
Type: TC
Location: 447819 - 448667 (+)
Type: TC
Location: 447819 - 448667 (+)
Gene ID: k141_19066_387
Type:
Location: 449206 - 449496 (-)
Type:
Location: 449206 - 449496 (-)
Gene ID: k141_19066_388
Type: TC
Location: 450423 - 451379 (-)
Type: TC
Location: 450423 - 451379 (-)
Gene ID: k141_19066_389
Type:
Location: 451529 - 451780 (-)
Type:
Location: 451529 - 451780 (-)
Gene ID: k141_19066_390
Type: TC
Location: 451870 - 452547 (-)
Type: TC
Location: 451870 - 452547 (-)
Gene ID: k141_19066_391
Type: pfam
Location: 452778 - 454286 (+)
Type: pfam
Location: 452778 - 454286 (+)
Gene ID: k141_19066_392
Type: TC
Location: 454439 - 454918 (+)
Type: TC
Location: 454439 - 454918 (+)
Gene ID: k141_19066_393
Type: TC
Location: 454932 - 455942 (+)
Type: TC
Location: 454932 - 455942 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Species
Clostridium_E sp023401495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.