dbCAN Logo

Cluster: CGMR041908_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_27691 k141_27691_15 10763 11542 - 3.A.16.1.3
TC k141_27691 k141_27691_16 11895 12893 + 3.A.1.14.16
TC k141_27691 k141_27691_17 12886 13644 + 3.A.1.14.8
pfam k141_27691 k141_27691_18 13661 15106 - TP_methylase | NAD_binding_7
STP k141_27691 k141_27691_19 15182 16255 - Peripla_BP_2
TC k141_27691 k141_27691_20 16415 17098 + 2.A.88.3.1
pfam k141_27691 k141_27691_21 17118 18296 + MFS_1
STP k141_27691 k141_27691_22 18409 20622 + EAL | GGDEF | dCache_1
CAZyme k141_27691 k141_27691_23 20952 22097 - CE9
sulfatase k141_27691 k141_27691_24 22094 22849 - S1_9
TF k141_27691 k141_27691_25 23024 23788 - HTH_AraC | HTH_AraC
TC k141_27691 k141_27691_26 23858 24724 - 3.A.1.1.18
TC k141_27691 k141_27691_27 24725 25693 - 3.A.1.1.7
STP k141_27691 k141_27691_28 25730 27070 - SBP_bac_1
TC k141_27691 k141_27691_29 27167 29017 - 8.A.59.2.1
pfam k141_27691 k141_27691_30 29166 30551 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme k141_27691 k141_27691_31 30676 33117 - GH94
Gene ID: k141_27691_15
Type: TC
Location: 10763 - 11542 (-)
Gene ID: k141_27691_16
Type: TC
Location: 11895 - 12893 (+)
Gene ID: k141_27691_17
Type: TC
Location: 12886 - 13644 (+)
Gene ID: k141_27691_18
Type: pfam
Location: 13661 - 15106 (-)
Gene ID: k141_27691_19
Type: STP
Location: 15182 - 16255 (-)
Gene ID: k141_27691_20
Type: TC
Location: 16415 - 17098 (+)
Gene ID: k141_27691_21
Type: pfam
Location: 17118 - 18296 (+)
Gene ID: k141_27691_22
Type: STP
Location: 18409 - 20622 (+)
Gene ID: k141_27691_23
Type: CAZyme
Location: 20952 - 22097 (-)
Gene ID: k141_27691_24
Type: sulfatase
Location: 22094 - 22849 (-)
Gene ID: k141_27691_25
Type: TF
Location: 23024 - 23788 (-)
Gene ID: k141_27691_26
Type: TC
Location: 23858 - 24724 (-)
Gene ID: k141_27691_27
Type: TC
Location: 24725 - 25693 (-)
Gene ID: k141_27691_28
Type: STP
Location: 25730 - 27070 (-)
Gene ID: k141_27691_29
Type: TC
Location: 27167 - 29017 (-)
Gene ID: k141_27691_30
Type: pfam
Location: 29166 - 30551 (-)
Gene ID: k141_27691_31
Type: CAZyme
Location: 30676 - 33117 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_27691_27 vegetarian > vegan 2.53537 0.00385

🧭 Explore Read Mapping of CGC

← Back to Cluster List