Cluster: CGMR041908_CGC40
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR041908
- CGC Family ID: CGCFAM_00876
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_64540 | k141_64540_3 | 2700 | 4511 | + | 8.A.59.2.1 |
| TC | k141_64540 | k141_64540_4 | 4947 | 5894 | + | 3.A.1.1.29 |
| TC | k141_64540 | k141_64540_5 | 5910 | 6800 | + | 3.A.1.1.29 |
| TC | k141_64540 | k141_64540_6 | 6846 | 8561 | + | 3.A.1.1.29 |
| CAZyme | k141_64540 | k141_64540_7 | 8917 | 10980 | + | GH42 |
| CAZyme | k141_64540 | k141_64540_8 | 11057 | 12538 | + | GH29 |
Gene ID: k141_64540_3
Type: TC
Location: 2700 - 4511 (+)
Type: TC
Location: 2700 - 4511 (+)
Gene ID: k141_64540_4
Type: TC
Location: 4947 - 5894 (+)
Type: TC
Location: 4947 - 5894 (+)
Gene ID: k141_64540_5
Type: TC
Location: 5910 - 6800 (+)
Type: TC
Location: 5910 - 6800 (+)
Gene ID: k141_64540_6
Type: TC
Location: 6846 - 8561 (+)
Type: TC
Location: 6846 - 8561 (+)
Gene ID: k141_64540_7
Type: CAZyme
Location: 8917 - 10980 (+)
Type: CAZyme
Location: 8917 - 10980 (+)
Gene ID: k141_64540_8
Type: CAZyme
Location: 11057 - 12538 (+)
Type: CAZyme
Location: 11057 - 12538 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.